Skip to main content

 9XHK | pdb_00009xhk

Cryo-EM structure of the native ARC-bound 70S ribosome from stationary-phase Methanolobus


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth AF]50S ribosomal protein L7Ae---
H [auth AE]Large ribosomal subunit protein uL6
G [auth AD]Large ribosomal subunit protein uL5
IB [auth LF]CBS-domain-containing membrane protein- - -
HB [auth CS]CBS-domain-containing membrane protein- - -
F [auth AC]50S ribosomal protein L4---
GB [auth Bc]Putative Zn-ribbon RNA-binding protein with a function in translation- - -
FB [auth Ba]DUF5350 domain-containing protein- - -
EB [auth BZ]Small ribosomal subunit protein eS28
DB [auth BY]Small ribosomal subunit protein eS27
CB [auth BV]Small ribosomal subunit protein eS24
BB [auth BU]30S ribosomal protein S19e---
AB [auth BT]Small ribosomal subunit protein uS19
ZA [auth BS]Small ribosomal subunit protein eS17
YA [auth BR]Small ribosomal subunit protein uS17
XA [auth BQ]Small ribosomal subunit protein uS15
E [auth AB]Large ribosomal subunit protein uL3
WA [auth BP]Small ribosomal subunit protein uS14
VA [auth BO]Small ribosomal subunit protein uS13
UA [auth BN]Small ribosomal subunit protein uS12
TA [auth BM]Small ribosomal subunit protein uS11
SA [auth BL]Small ribosomal subunit protein uS10
RA [auth BK]Small ribosomal subunit protein uS9
QA [auth BJ]Small ribosomal subunit protein eS8
PA [auth BI]30S ribosomal protein S8---
OA [auth BH]Small ribosomal subunit protein uS7
NA [auth BG]30S ribosomal protein S6e---
D [auth AA]Large ribosomal subunit protein uL2
MA [auth BF]Small ribosomal subunit protein uS5
LA [auth BE]30S ribosomal protein S4e---
KA [auth BD]Small ribosomal subunit protein uS4
JA [auth BC]30S ribosomal protein S3---
IA [auth BB]Small ribosomal subunit protein uS2
HA [auth BA]30S ribosomal protein S3Ae---
GA [auth Ai]Large ribosomal subunit protein eL43
FA [auth Ah]Large ribosomal subunit protein eL42
EA [auth Ag]Large ribosomal subunit protein eL40
DA [auth Af]Large ribosomal subunit protein eL39
C [auth 4]16S rRNA---
CA [auth Ad]Large ribosomal subunit protein eL37
BA [auth Ab]50S ribosomal protein L32e---
AA [auth Aa]50S ribosomal protein L31e---
Z [auth AZ]Ribosomal protein L30E - -
Y [auth AY]50S ribosomal protein L30---
X [auth AX]Large ribosomal subunit protein uL29
W [auth AW]Large ribosomal subunit protein eL24 -
V [auth AV]Large ribosomal subunit protein uL24
U [auth AU]50S ribosomal protein L23---
T [auth AT]50S ribosomal protein L22---
B [auth 2]5S rRNA---
S [auth AS]Large ribosomal subunit protein eL21
R [auth AR]Large ribosomal subunit protein eL20
Q [auth AQ]Large ribosomal subunit protein eL19
P [auth AP]Large ribosomal subunit protein eL18
O [auth AO]Large ribosomal subunit protein uL18
N [auth AN]Large ribosomal subunit protein uL16
M [auth AM]50S ribosomal protein L15e---
L [auth AL]Large ribosomal subunit protein uL15
K [auth AI]Large ribosomal subunit protein uL14
J [auth AG]50S ribosomal protein L13---
A [auth 1]23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth AE]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth AE]IPR019907Large ribosomal subunit protein uL6, archaeaFamily
H [auth AE]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth AE]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth AD]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
G [auth AD]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
G [auth AD]IPR022804Large ribosomal subunit protein uL5, archaeaFamily
G [auth AD]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth AD]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth AD]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth AD]IPR002132Large ribosomal subunit protein uL5Family
IB [auth LF]IPR051257Diverse Function CBS-Domain-Containing ProteinFamily
IB [auth LF]IPR046342CBS domain superfamilyHomologous Superfamily
IB [auth LF]IPR000644CBS domainDomain
HB [auth CS]IPR051462CBS domain-containing proteinFamily
HB [auth CS]IPR046342CBS domain superfamilyHomologous Superfamily
HB [auth CS]IPR000644CBS domainDomain
GB [auth Bc]IPR044720Small ribosomal subunit protein aS21Family
GB [auth Bc]IPR011668Ribosomal protein aS21, zinc-binding pocketDomain
FB [auth Ba]IPR035258Protein of unknown function DUF5350Family
EB [auth BZ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EB [auth BZ]IPR000289Small ribosomal subunit protein eS28Family
DB [auth BY]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
DB [auth BY]IPR000592Small ribosomal subunit protein eS27Family
DB [auth BY]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CB [auth BV]IPR001976Small ribosomal subunit protein eS24Family
CB [auth BV]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
CB [auth BV]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AB [auth BT]IPR002222Small ribosomal subunit protein uS19Family
AB [auth BT]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
AB [auth BT]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
AB [auth BT]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
ZA [auth BS]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
ZA [auth BS]IPR001210Small ribosomal subunit protein eS17Family
ZA [auth BS]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
YA [auth BR]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
YA [auth BR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
YA [auth BR]IPR000266Small ribosomal subunit protein uS17Family
YA [auth BR]IPR019978Small ribosomal subunit protein uS17, archaealFamily
YA [auth BR]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
XA [auth BQ]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
XA [auth BQ]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
XA [auth BQ]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
XA [auth BQ]IPR000589Small ribosomal subunit protein uS15Family
E [auth AB]IPR019928Large ribosomal subunit protein uL3, archaeaFamily
E [auth AB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth AB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth AB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth AB]IPR000597Large ribosomal subunit protein uL3Family
E [auth AB]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
WA [auth BP]IPR001209Small ribosomal subunit protein uS14Family
WA [auth BP]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
WA [auth BP]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
WA [auth BP]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
WA [auth BP]IPR023676Small ribosomal subunit protein uS14, archaeaFamily
VA [auth BO]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
VA [auth BO]IPR001892Small ribosomal subunit protein uS13Family
VA [auth BO]IPR019977Small ribosomal subunit protein uS13, archaeaFamily
VA [auth BO]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
VA [auth BO]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
UA [auth BN]IPR006032Small ribosomal subunit protein uS12Family
UA [auth BN]IPR022863Ribosomal protein uS12, archaeaFamily
UA [auth BN]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
UA [auth BN]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
TA [auth BM]IPR019961Small ribosomal subunit protein uS11, archaeaFamily
TA [auth BM]IPR001971Small ribosomal subunit protein uS11Family
TA [auth BM]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
TA [auth BM]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
SA [auth BL]IPR001848Small ribosomal subunit protein uS10Family
SA [auth BL]IPR027486Small ribosomal subunit protein uS10 domainDomain
SA [auth BL]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
SA [auth BL]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
SA [auth BL]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
RA [auth BK]IPR019958Small ribosomal subunit protein uS9, archaeaFamily
RA [auth BK]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
RA [auth BK]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
RA [auth BK]IPR000754Small ribosomal subunit protein uS9Family
RA [auth BK]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth BJ]IPR001047Small ribosomal subunit protein eS8Family
QA [auth BJ]IPR020919Small ribosomal subunit protein eS8, archaeaFamily
QA [auth BJ]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
QA [auth BJ]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
OA [auth BH]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
OA [auth BH]IPR000235Small ribosomal subunit protein uS7Family
OA [auth BH]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
OA [auth BH]IPR026018Small ribosomal subunit protein uS7, archaeaFamily
OA [auth BH]IPR023798Small ribosomal subunit protein uS7 domainDomain
OA [auth BH]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
D [auth AA]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
D [auth AA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth AA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth AA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth AA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth AA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth AA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth AA]IPR002171Large ribosomal subunit protein uL2Family
MA [auth BF]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
MA [auth BF]IPR000851Small ribosomal subunit protein uS5Family
MA [auth BF]IPR047866Small ribosomal subunit protein uS5, archaeaFamily
MA [auth BF]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
MA [auth BF]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
MA [auth BF]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MA [auth BF]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
MA [auth BF]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KA [auth BD]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
KA [auth BD]IPR002942RNA-binding S4 domainDomain
KA [auth BD]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
KA [auth BD]IPR022802Small ribosomal subunit protein uS4, archaeaFamily
KA [auth BD]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KA [auth BD]IPR022801Small ribosomal subunit protein uS4Family
KA [auth BD]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
IA [auth BB]IPR023454Small ribosomal subunit protein uS2, archaeaFamily
IA [auth BB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IA [auth BB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IA [auth BB]IPR001865Small ribosomal subunit protein uS2Family
IA [auth BB]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
GA [auth Ai]IPR002674Large ribosomal subunit protein eL43Family
GA [auth Ai]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth Ai]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GA [auth Ai]IPR050522Eukaryotic ribosomal protein eL43Family
FA [auth Ah]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
FA [auth Ah]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth Ah]IPR000552Large ribosomal subunit protein eL42Family
EA [auth Ag]IPR023657Large ribosomal subunit protein eL40, archaeaFamily
EA [auth Ag]IPR001975Large ribosomal subunit protein eL40 domainDomain
EA [auth Ag]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
EA [auth Ag]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth Af]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
DA [auth Af]IPR000077Large ribosomal subunit protein eL39Family
DA [auth Af]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
CA [auth Ad]IPR001569Large ribosomal subunit protein eL37Family
CA [auth Ad]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
CA [auth Ad]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth Ad]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
Z [auth AZ]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
Z [auth AZ]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Z [auth AZ]IPR039109Large ribosomal subunit protein eL30-likeFamily
Z [auth AZ]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
X [auth AX]IPR001854Large ribosomal subunit protein uL29Family
X [auth AX]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth AX]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth AW]IPR011017TRASH domainDomain
W [auth AW]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
W [auth AW]IPR055345Large ribosomal subunit protein eL24-like, archaeaFamily
W [auth AW]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
W [auth AW]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
V [auth AV]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
V [auth AV]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
V [auth AV]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth AV]IPR005824KOWDomain
V [auth AV]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth AS]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth AS]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth AS]IPR022856Large ribosomal subunit protein eL21, archaeaFamily
S [auth AS]IPR001147Large ribosomal subunit protein eL21Family
S [auth AS]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth AR]IPR028877Large ribosomal subunit protein eL20Family
R [auth AR]IPR023573Large ribosomal subunit protein eL20 domainDomain
Q [auth AQ]IPR015974Large ribosomal subunit protein eL19, domain 3Homologous Superfamily
Q [auth AQ]IPR039547Large ribosomal subunit protein eL19Family
Q [auth AQ]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Q [auth AQ]IPR057260Ribosomal protein L19e, C-terminal domainDomain
Q [auth AQ]IPR033936Large ribosomal subunit protein eL19, archaeaDomain
Q [auth AQ]IPR015973Large ribosomal subunit protein eL19, domain 2Homologous Superfamily
Q [auth AQ]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Q [auth AQ]IPR057259Ribosomal protein L19e, N-terminal domainDomain
Q [auth AQ]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Q [auth AQ]IPR000196Large ribosomal subunit protein eL19 domainDomain
P [auth AP]IPR022947Large ribosomal subunit protein eL18, archaeaFamily
P [auth AP]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth AP]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
P [auth AP]IPR000039Large ribosomal subunit protein eL18Family
P [auth AP]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth AO]IPR057268Large ribosomal subunit protein uL18Family
O [auth AO]IPR057267Large ribosomal subunit protein uL18, archaeaFamily
O [auth AO]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
N [auth AN]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
N [auth AN]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
N [auth AN]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
N [auth AN]IPR022981Large ribosomal subunit protein uL16, archaeaFamily
N [auth AN]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth AN]IPR047873Large ribosomal subunit protein uL16Family
L [auth AL]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
L [auth AL]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth AL]IPR030878Large ribosomal subunit protein uL15Family
L [auth AL]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth AL]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth AI]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth AI]IPR000218Large ribosomal subunit protein uL14Family
K [auth AI]IPR019971Large ribosomal subunit protein uL14, archaeaFamily
K [auth AI]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site