Crystal structure of NodD-EBD (Effector Binding Domain) from Rhizobium leguminosarum bv. vicae 3841


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HSec23_trunke9x6wH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
GSec23_trunke9x6wG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
FSec23_trunke9x6wF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
ESec23_trunke9x6wE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
DSec23_trunke9x6wD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
CSec23_trunke9x6wC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
BSec23_trunke9x6wB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Sec23_trunkECOD (v295.2)
ADM10_dome9x6wA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DM10_domECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
LysR family transcriptional regulator - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR050389HTH-type transcriptional regulator YidZ/Nodulation protein-likeFamily
A, B, C, D, E
IPR005119LysR, substrate-bindingDomain
A, B, C, D, E
IPR000847LysR, HTH, N-terminal domainDomain
A, B, C, D, E
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR037416Nodulation protein D, PBP2Domain