9X5G | pdb_00009x5g

Cryo-EM structure of quinary complex GA3-MtGID1b-MtDELLA1-SLY1-ASK1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DELLA protein 1	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding nucleic acid binding	developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of developmental process negative regulation of developmental process negative regulation of biological process biological regulation regulation of seedling development seed germination negative regulation of post-embryonic development seedling development multicellular organism development regulation of post-embryonic development negative regulation of seed germination developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of developmental process negative regulation of developmental process negative regulation of biological process biological regulation regulation of seedling development seed germination negative regulation of post-embryonic development seedling development multicellular organism development regulation of post-embryonic development negative regulation of seed germination regulation of seed germination anatomical structure development regulation of multicellular organismal process post-embryonic development negative regulation of multicellular organismal process regulation of reproductive process reproductive process developmental process involved in reproduction seed dormancy process fruit development seed development regulation of seed maturation reproductive structure development seed maturation system development reproductive system development regulation of seed development multicellular organismal reproductive process plant gross anatomical part developmental process developmental maturation regulation of seed dormancy process dormancy process animal gross anatomical part developmental process cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway response to endogenous stimulus gibberellic acid mediated signaling pathway response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process response to abscisic acid response to alcohol transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process cellular response to nutrient levels response to nutrient levels cellular response to phosphate starvation cellular response to stress response to stress response to starvation cellular response to starvation negative regulation of signaling regulation of signal transduction negative regulation of cell communication negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of gibberellic acid mediated signaling pathway regulation of gibberellic acid mediated signaling pathway negative regulation of signal transduction regulation of response to stimulus regulation of cell communication response to symbiont biological process involved in interspecies interaction between organisms response to other organism response to symbiotic fungus response to external stimulus response to external biotic stimulus response to fungus response to biotic stimulus arbuscular mycorrhizal association biological process involved in symbiotic interaction	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
B	Gibberellin receptor GID1c-like protein	organic acid binding binding ion binding anion binding isoprenoid binding gibberellin binding lipid binding carboxylic acid binding hormone binding small molecule binding hydrolase activity, acting on ester bonds carboxylesterase activity carboxylic ester hydrolase activity hydrolase activity organic acid binding binding ion binding anion binding isoprenoid binding gibberellin binding lipid binding carboxylic acid binding hormone binding small molecule binding hydrolase activity, acting on ester bonds carboxylesterase activity carboxylic ester hydrolase activity hydrolase activity catalytic activity	developmental process multicellular organismal process reproductive system development fruit morphogenesis reproductive process plant gross anatomical part developmental process developmental process involved in reproduction post-embryonic plant morphogenesis anatomical structure morphogenesis multicellular organism development fruit development anatomical structure development reproductive structure development animal gross anatomical part developmental process developmental process multicellular organismal process reproductive system development fruit morphogenesis reproductive process plant gross anatomical part developmental process developmental process involved in reproduction post-embryonic plant morphogenesis anatomical structure morphogenesis multicellular organism development fruit development anatomical structure development reproductive structure development animal gross anatomical part developmental process system development cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway regulation of biological process response to endogenous stimulus gibberellic acid mediated signaling pathway biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid cellular process reproductive shoot system development post-embryonic development plant organ development flower development post-embryonic plant organ morphogenesis plant organ morphogenesis post-embryonic plant organ development shoot system development floral organ morphogenesis floral organ development positive regulation of cell communication positive regulation of signal transduction positive regulation of gibberellic acid mediated signaling pathway positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus positive regulation of cellular process regulation of signaling regulation of gibberellic acid mediated signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
C	F-box protein GID2	ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway regulation of biological process response to endogenous stimulus gibberellic acid mediated signaling pathway biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid cellular process developmental process multicellular organismal process reproductive system development reproductive process multicellular organismal reproductive process plant gross anatomical part developmental process developmental maturation developmental process involved in reproduction seed dormancy process multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development dormancy process animal gross anatomical part developmental process seed maturation system development primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal seed germination seedling development catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process positive regulation of cell communication positive regulation of signal transduction positive regulation of gibberellic acid mediated signaling pathway positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus positive regulation of cellular process regulation of signaling regulation of gibberellic acid mediated signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling	cellular anatomical structure intracellular anatomical structure cytoplasm cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus cellular anatomical structure intracellular anatomical structure cytoplasm cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
D	SKP1-like protein 1A	protein binding binding cullin family protein binding	cellular process cell cycle mitotic cell cycle chromosome segregation cell cycle process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus cellular process cell cycle mitotic cell cycle chromosome segregation cell cycle process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus regulation of cellular process signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus signal transduction cellular response to hormone stimulus regulation of biological process biological regulation jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus cellular response to lipid sexual reproduction reproductive process organelle fission meiotic cell cycle male meiotic nuclear division multicellular organismal reproductive process meiotic cell cycle process male gamete generation gamete generation cellular component organization nuclear division organelle organization meiotic nuclear division cellular component organization or biogenesis regulation of DNA recombination negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process DNA recombination primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process negative regulation of DNA recombination negative regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process phosphorelay signal transduction system cellular response to ethylene stimulus intracellular signal transduction ethylene-activated signaling pathway response to ethylene response to auxin microtubule cytoskeleton organization microtubule-based process cytoskeleton organization auxin-activated signaling pathway cellular response to auxin stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cytoskeleton spindle membraneless organelle intracellular membraneless organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038088	DELLA, N-terminal domain superfamily	Homologous Superfamily
A	IPR005202	Transcription factor GRAS	Family
A	IPR021914	Transcriptional factor DELLA, N-terminal	Domain
B	IPR033140	Lipase, GDXG, putative serine active site	Active Site
B	IPR050466	Carboxylesterases/Gibberellin receptors	Family
B	IPR002168	Acyl esterase GDXG, putative histidine active site	Active Site
B	IPR013094	Alpha/beta hydrolase fold-3	Domain
B	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
C	IPR036047	F-box-like domain superfamily	Homologous Superfamily
C	IPR044184	F-box protein SNE/GID2	Family
C	IPR001810	F-box domain	Domain
D	IPR016073	SKP1 component, POZ domain	Domain
D	IPR001232	S-phase kinase-associated protein 1-like	Family
D	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
D	IPR016072	SKP1 component, dimerisation	Domain
D	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
D	IPR016897	S-phase kinase-associated protein 1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.