9WQV | pdb_00009wqv

Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
W [auth M]	e9wqvM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
V [auth L]	e9wqvL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
R [auth H]	e9wqvH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
M [auth C]	e9wqvC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
IA [auth Y]	e9wqvY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
Z [auth P]	e9wqvP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
KA [auth a]	NADH:ubiquinone oxidoreductase 41 kd complex i subunit	-	-	-
W [auth M]	Reaction center protein M chain	-	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular vesicle light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle vesicle
V [auth L]	Reaction center protein L chain	-	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular vesicle light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle vesicle
R [auth H]	photosynthetic reaction center subunit H	-	-	-
M [auth C]	Photosynthetic reaction center cytochrome c subunit	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], IA [auth Y], J [auth 9], K [auth A], N [auth D], P [auth F], S [auth I], U [auth K], Y [auth O]	Antenna pigment protein alpha chain	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], O [auth E], Q [auth G], T [auth J], X [auth N], Z [auth P]	Antenna pigment protein beta chain	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
W [auth M]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
W [auth M]	IPR005781	Photosynthetic reaction centre, M subunit	Family
W [auth M]	IPR000484	Photosynthetic reaction centre, L/M	Family
W [auth M]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
V [auth L]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
V [auth L]	IPR000484	Photosynthetic reaction centre, L/M	Family
V [auth L]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
V [auth L]	IPR005871	Photosynthetic reaction centre, L subunit	Family
M [auth C]	IPR036280	Multiheme cytochrome superfamily	Homologous Superfamily
M [auth C]	IPR023119	Multihaem cytochrome, PRC subunit superfamily	Homologous Superfamily
M [auth C]	IPR003158	Photosynthetic reaction centre, cytochrome c subunit	Family
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], IA [auth Y], J [auth 9], K [auth A], N [auth D], P [auth F], S [auth I], U [auth K], Y [auth O]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], IA [auth Y], J [auth 9], K [auth A], N [auth D], P [auth F], S [auth I], U [auth K], Y [auth O]	IPR018332	Antenna complex, alpha subunit	Family
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], IA [auth Y], J [auth 9], K [auth A], N [auth D], P [auth F], S [auth I], U [auth K], Y [auth O]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], IA [auth Y], J [auth 9], K [auth A], N [auth D], P [auth F], S [auth I], U [auth K], Y [auth O]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], O [auth E], Q [auth G], T [auth J], X [auth N], Z [auth P]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], O [auth E], Q [auth G], T [auth J], X [auth N], Z [auth P]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], O [auth E], Q [auth G], T [auth J], X [auth N], Z [auth P]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], O [auth E], Q [auth G], T [auth J], X [auth N], Z [auth P]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], O [auth E], Q [auth G], T [auth J], X [auth N], Z [auth P]	IPR002362	Light-harvesting protein B beta chain	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], IA [auth Y], J [auth 9], K [auth A], N [auth D], P [auth F], S [auth I], U [auth K], Y [auth O]	FME	Parent Component: MET : AA0021 , AA0566 : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.