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 9WD5 | pdb_00009wd5

Cryo-EM structure of PSI-CpcL

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
U [auth t]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094669 3000824 SCOP2B (2022-06-29)
SA [auth j]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094669 3000824 SCOP2B (2022-06-29)
I [auth T]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094669 3000824 SCOP2B (2022-06-29)
GA [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094669 3000824 SCOP2B (2022-06-29)
T [auth s]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094713 3000813 SCOP2B (2022-06-29)
RA [auth f]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094713 3000813 SCOP2B (2022-06-29)
H [auth S]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094713 3000813 SCOP2B (2022-06-29)
FA [auth F]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094713 3000813 SCOP2B (2022-06-29)
S [auth r]SCOP2B SuperfamilyElectron transport accessory proteins 8093812 3000325 SCOP2B (2022-06-29)
QA [auth e]SCOP2B SuperfamilyElectron transport accessory proteins 8093812 3000325 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyElectron transport accessory proteins 8093812 3000325 SCOP2B (2022-06-29)
EA [auth E]SCOP2B SuperfamilyElectron transport accessory proteins 8093812 3000325 SCOP2B (2022-06-29)
R [auth q]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8094737 3000951 SCOP2B (2022-06-29)
PA [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8094737 3000951 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8094737 3000951 SCOP2B (2022-06-29)
DA [auth D]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8094737 3000951 SCOP2B (2022-06-29)
Q [auth p]SCOP2B Superfamily4Fe-4S ferredoxins 8093786 3000020 SCOP2B (2022-06-29)
OA [auth c]SCOP2B Superfamily4Fe-4S ferredoxins 8093786 3000020 SCOP2B (2022-06-29)
E [auth P]SCOP2B Superfamily4Fe-4S ferredoxins 8093786 3000020 SCOP2B (2022-06-29)
CA [auth C]SCOP2B Superfamily4Fe-4S ferredoxins 8093786 3000020 SCOP2B (2022-06-29)
P [auth n]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094389 3000850 SCOP2B (2022-06-29)
NA [auth b]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094389 3000850 SCOP2B (2022-06-29)
D [auth N]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094389 3000850 SCOP2B (2022-06-29)
BA [auth B]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094389 3000850 SCOP2B (2022-06-29)
Z [auth A]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094435 3000850 SCOP2B (2022-06-29)
N [auth g]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094435 3000850 SCOP2B (2022-06-29)
LA [auth a]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094435 3000850 SCOP2B (2022-06-29)
B [auth G]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094435 3000850 SCOP2B (2022-06-29)
Y [auth y]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094801 3000829 SCOP2B (2022-06-29)
WA [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094801 3000829 SCOP2B (2022-06-29)
M [auth Y]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094801 3000829 SCOP2B (2022-06-29)
KA [auth M]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094801 3000829 SCOP2B (2022-06-29)
X [auth w]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8095527 3000870 SCOP2B (2022-06-29)
VA [auth l]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8095527 3000870 SCOP2B (2022-06-29)
L [auth W]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8095527 3000870 SCOP2B (2022-06-29)
JA [auth L]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8095527 3000870 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
U [auth t]ClpB_D2-smalle9wd5t1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
I [auth T]Thioredoxine9wd5T1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
H [auth S]Thioredoxine9wd5S1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
G [auth R]Thioredoxine9wd5R1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
R [auth q]ClpB_D2-smalle9wd5q1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
F [auth Q]Thioredoxine9wd5Q1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
P [auth n]ClpB_D2-smalle9wd5n1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
BA [auth B]ClpB_D2-smalle9wd5B1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
O [auth h]Thioredoxine9wd5h1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
C [auth H]ClpB_D2-smalle9wd5H1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
N [auth g]Thioredoxine9wd5g1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
B [auth G]ClpB_D2-smalle9wd5G1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
L [auth W]Thioredoxine9wd5W1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
W [auth v]ClpB_D2-smalle9wd5v1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
K [auth V]Thioredoxine9wd5V1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)
V [auth u]ClpB_D2-smalle9wd5u1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)
J [auth U]Thioredoxine9wd5U1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		PF02531PsaD (PsaD)PsaD- Family
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		Photosystem I reaction center subunit IX-
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		Photosystem I reaction center subunit III-
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		Photosystem I reaction center subunit IV-
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		Photosystem I reaction center subunit II-
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		Photosystem I iron-sulfur center
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		Photosystem I P700 chlorophyll a apoprotein A2 1
AA [auth X],
C [auth H],
MA [auth x],
O [auth h]		Photosystem I 4.8 kDa protein- -
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		Photosystem I P700 chlorophyll a apoprotein A1
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		Photosystem I reaction center subunit XII-
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		Photosystem I reaction center subunit XI-
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		Photosystem I reaction center subunit VIII-
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		Photosystem I reaction center subunit PsaK 1-
A [auth 1]Photosystem I-associated linker protein CpcL-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		IPR003685Photosystem I PsaDFamily
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR050157Photosystem I iron-sulfur centerFamily
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR017491Photosystem I protein PsaCFamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR001280Photosystem I PsaA/PsaBFamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR006244Photosystem I PsaBFamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
AA [auth X],
C [auth H],
MA [auth x],
O [auth h]		IPR036243Photosystem I PsaX superfamilyHomologous Superfamily
AA [auth X],
C [auth H],
MA [auth x],
O [auth h]		IPR012986Photosystem I PsaXFamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR006243Photosystem I PsaAFamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR001280Photosystem I PsaA/PsaBFamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		IPR010010Photosystem I PsaM, reaction centreFamily
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		IPR022980Photosystem I, reaction centre subunit XIFamily
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		IPR001302Photosystem I reaction centre subunit VIIIFamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR000549Photosystem I reaction center subunit V/PsaKFamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR017492Photosystem I reaction center subunit PsaKFamily
A [auth 1]IPR016470Phycobilisome linker proteinFamily
A [auth 1]IPR001297Phycobilisome linker domainDomain
A [auth 1]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily