9WAH | pdb_00009wah

Yeast-expressed polio type 1 stabilized virus-like particles


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth I]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8036553 3000918 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth F]PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
C [auth H]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
B [auth I]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
A [auth J]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth F]Capsid protein VP4
C [auth H]Capsid protein VP2
B [auth I]Capsid protein VP3
A [auth J]Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth F]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth F]IPR002527Picornavirus 2B proteinDomain
D [auth F]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth F]IPR003138Picornavirus coat protein VP4Family
D [auth F]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth F]IPR001676Picornavirus capsidDomain
D [auth F]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth F]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth F]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth F]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
D [auth F]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth F]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth F]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth F]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth F]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth F]IPR014838Poliovirus 3A protein-likeDomain
D [auth F]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth F]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth F]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth H]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth H]IPR002527Picornavirus 2B proteinDomain
C [auth H]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth H]IPR003138Picornavirus coat protein VP4Family
C [auth H]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth H]IPR001676Picornavirus capsidDomain
C [auth H]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth H]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth H]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth H]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth H]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth H]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth H]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth H]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth H]IPR014838Poliovirus 3A protein-likeDomain
C [auth H]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth H]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth H]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth I]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth I]IPR002527Picornavirus 2B proteinDomain
B [auth I]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth I]IPR003138Picornavirus coat protein VP4Family
B [auth I]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth I]IPR001676Picornavirus capsidDomain
B [auth I]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth I]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth I]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth I]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth I]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth I]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth I]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth I]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth I]IPR014838Poliovirus 3A protein-likeDomain
B [auth I]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth I]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth I]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A [auth J]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth J]IPR002527Picornavirus 2B proteinDomain
A [auth J]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth J]IPR003138Picornavirus coat protein VP4Family
A [auth J]IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth J]IPR001676Picornavirus capsidDomain
A [auth J]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth J]IPR000081Peptidase C3, picornavirus core protein 2ADomain
A [auth J]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A [auth J]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth J]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth J]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth J]IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth J]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth J]IPR014838Poliovirus 3A protein-likeDomain
A [auth J]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A [auth J]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth J]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain