9WA7 | pdb_00009wa7

Crystal Structure of Human NFIX in Complex with TGGCA(N3)TGCCA Palindromic DNA

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	DNA (5'-D(GPAPTPGPGPCPAPTPCPTPTPGPCPCPAPAPCPT)-3')	-	-	-
B	DNA (5'-D(APGPTPTPGPGPCPAPAPGPAPTPGPCPCPAPTPC)-3')	-	-	-
A	Nuclear factor 1 X-type	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process RNA biosynthetic process DNA-templated transcription nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR003619	MAD homology 1, Dwarfin-type	Domain
A	IPR019739	CTF transcription factor/nuclear factor 1, conserved site	Conserved Site
A	IPR019548	CTF transcription factor/nuclear factor 1, N-terminal	Domain
A	IPR020604	CTF transcription factor/nuclear factor 1, DNA-binding domain	Domain
A	IPR000647	CTF transcription factor/nuclear factor 1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q14938	Marshall-Smith syndrome Malan overgrowth syndrome bipolar disorder psoriasis acute myeloid leukemia breast cancer ductal breast carcinoma in situ lung adenocarcinoma malignant ependymoma medulloblastoma pancreatic ductal adenocarcinoma vascular disease astrocytic tumor breast carcinoma intellectual disability Marshall-Smith syndrome Malan overgrowth syndrome bipolar disorder psoriasis acute myeloid leukemia breast cancer ductal breast carcinoma in situ lung adenocarcinoma malignant ependymoma medulloblastoma pancreatic ductal adenocarcinoma vascular disease astrocytic tumor breast carcinoma intellectual disability lung carcinoma malignant mesothelioma oligodendroglioma pituitary cancer chromosome 19p13.13 deletion syndrome invasive ductal breast carcinoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.