Annotations: 9W4J

Cryo-EM structure of CpcL-PBS3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
LA [auth k]	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
JA [auth i]	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
HA [auth g]	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
FA [auth e]	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
DA [auth c]	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
BA [auth a]	SCOP2B Superfamily	Globin-like	8105425	3000554	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
KA [auth j]	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
IA [auth h]	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
GA [auth f]	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
EA [auth d]	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
CA [auth b]	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)
AA [auth N]	SCOP2B Superfamily	Globin-like	8105427	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
MA [auth 4]	CpcD	e9w4j41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CpcD	ECOD (v295.2)
NA [auth 3]	ClpB_D2-small	e9w4j31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
N [auth 2]	CpcD	e9w4j21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CpcD	ECOD (v295.2)
I	ClpB_D2-small	e9w4jI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
G	ClpB_D2-small	e9w4jG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
E	CpcD	e9w4jE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CpcD	ECOD (v295.2)
C	ClpB_D2-small	e9w4jC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
D	ClpB_D2-small	e9w4jD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
B	CpcD	e9w4jB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CpcD	ECOD (v295.2)
A [auth 1]	CpcD	e9w4j11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CpcD	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
MA [auth 4]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
N [auth 2], NA [auth 3]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
N [auth 2], NA [auth 3]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
BA [auth a], C, DA [auth c], E, FA [auth e], BA [auth a], C, DA [auth c], E, FA [auth e], G, HA [auth g], I, JA [auth i], K, LA [auth k], M, P, R, T, V, X, Z	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
AA [auth N], B, CA [auth b], D, EA [auth d], AA [auth N], B, CA [auth b], D, EA [auth d], F, GA [auth f], H, IA [auth h], J, KA [auth j], L, O, Q, S, U, W, Y	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A [auth 1]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
MA [auth 4]	Phycobilisome 34.5 kDa linker polypeptide, phycoerythrocyanin-associated, rod	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
N [auth 2], NA [auth 3]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
BA [auth a], C, DA [auth c], E, FA [auth e], BA [auth a], C, DA [auth c], E, FA [auth e], G, HA [auth g], I, JA [auth i], K, LA [auth k], M, P, R, T, V, X, Z	C-phycocyanin beta subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
AA [auth N], B, CA [auth b], D, EA [auth d], AA [auth N], B, CA [auth b], D, EA [auth d], F, GA [auth f], H, IA [auth h], J, KA [auth j], L, O, Q, S, U, W, Y	C-phycocyanin alpha subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A [auth 1]	Photosystem I-associated linker protein CpcL	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
MA [auth 4]	IPR016470	Phycobilisome linker protein	Family
MA [auth 4]	IPR008213	CpcD-like domain	Domain
MA [auth 4]	IPR001297	Phycobilisome linker domain	Domain
MA [auth 4]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
N [auth 2], NA [auth 3]	IPR016470	Phycobilisome linker protein	Family
N [auth 2], NA [auth 3]	IPR008213	CpcD-like domain	Domain
N [auth 2], NA [auth 3]	IPR001297	Phycobilisome linker domain	Domain
N [auth 2], NA [auth 3]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
BA [auth a], C, DA [auth c], E, FA [auth e], BA [auth a], C, DA [auth c], E, FA [auth e], G, HA [auth g], I, JA [auth i], K, LA [auth k], M, P, R, T, V, X, Z	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
BA [auth a], C, DA [auth c], E, FA [auth e], BA [auth a], C, DA [auth c], E, FA [auth e], G, HA [auth g], I, JA [auth i], K, LA [auth k], M, P, R, T, V, X, Z	IPR006247	Phycocyanin, beta subunit	Family
BA [auth a], C, DA [auth c], E, FA [auth e], BA [auth a], C, DA [auth c], E, FA [auth e], G, HA [auth g], I, JA [auth i], K, LA [auth k], M, P, R, T, V, X, Z	IPR009050	Globin-like superfamily	Homologous Superfamily
BA [auth a], C, DA [auth c], E, FA [auth e], BA [auth a], C, DA [auth c], E, FA [auth e], G, HA [auth g], I, JA [auth i], K, LA [auth k], M, P, R, T, V, X, Z	IPR012128	Phycobilisome, alpha/beta subunit	Family
AA [auth N], B, CA [auth b], D, EA [auth d], AA [auth N], B, CA [auth b], D, EA [auth d], F, GA [auth f], H, IA [auth h], J, KA [auth j], L, O, Q, S, U, W, Y	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
AA [auth N], B, CA [auth b], D, EA [auth d], AA [auth N], B, CA [auth b], D, EA [auth d], F, GA [auth f], H, IA [auth h], J, KA [auth j], L, O, Q, S, U, W, Y	IPR006246	Phycocyanin, alpha subunit	Family
AA [auth N], B, CA [auth b], D, EA [auth d], AA [auth N], B, CA [auth b], D, EA [auth d], F, GA [auth f], H, IA [auth h], J, KA [auth j], L, O, Q, S, U, W, Y	IPR009050	Globin-like superfamily	Homologous Superfamily
AA [auth N], B, CA [auth b], D, EA [auth d], AA [auth N], B, CA [auth b], D, EA [auth d], F, GA [auth f], H, IA [auth h], J, KA [auth j], L, O, Q, S, U, W, Y	IPR012128	Phycobilisome, alpha/beta subunit	Family
A [auth 1]	IPR016470	Phycobilisome linker protein	Family
A [auth 1]	IPR001297	Phycobilisome linker domain	Domain
A [auth 1]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily