Cryo-EM structure of the Cytoplasmic lattice(CPL) from mouse oocyte
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| PA [auth p] | SCOP2B Superfamily | PUA domain-like | 8038600 | 3001015 | SCOP2B (2022-06-29) |
| HA [auth P] | SCOP2B Superfamily | PUA domain-like | 8038600 | 3001015 | SCOP2B (2022-06-29) |
| N [auth d] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8052235 | 3001023 | SCOP2B (2022-06-29) |
| C [auth D] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8052235 | 3001023 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| RA [auth m] | RVP | e9w2mm1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (v294.2) |
| JA [auth M] | RVP | e9w2mM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (v294.2) |
| QA [auth l] | RVP | e9w2ml1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (v294.2) |
| IA [auth L] | RVP | e9w2mL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| HA [auth P], J [auth Q], PA [auth p], U [auth q] | PF02182 | SAD/SRA domain (SAD_SRA) | SAD/SRA domain | The domain goes by several names including SAD [1], SRA [2] and YDG [3]. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria [4]. Versions of this domain are known to bind hemi-me ... | Domain |
| HA [auth P], J [auth Q], PA [auth p], U [auth q] | PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
| HA [auth P], J [auth Q], PA [auth p], U [auth q] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
| I [auth O], T [auth o] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
| H [auth K], S [auth k] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | Domain | |
| H [auth K], S [auth k] | PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | Domain | |
| D [auth E], F [auth I], O [auth e], Q [auth i] | PF05729 | NACHT domain (NACHT) | NACHT domain | This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. | Domain |
| D [auth E], F [auth I], O [auth e], Q [auth i] | PF13516 | Leucine Rich repeat (LRR_6) | Leucine Rich repeat | - | Repeat |
| D [auth E], F [auth I], O [auth e], Q [auth i] | PF02758 | PAAD/DAPIN/Pyrin domain (PYRIN) | PAAD/DAPIN/Pyrin domain | This domain is predicted to contain 6 alpha helices and to have the same fold as the Pfam:PF00531 domain. This similarity may mean that this is a protein-protein interaction domain. | Domain |
| D [auth E], F [auth I], O [auth e], Q [auth i] | PF17776 | NLRC4 helical domain HD2 (NLRC4_HD2) | NLRC4 helical domain HD2 | This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. | Domain |
| D [auth E], F [auth I], O [auth e], Q [auth i] | PF17779 | NOD2 winged helix domain (WHD_NOD2) | NOD2 winged helix domain | This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. | Domain |
| C [auth D], N [auth d] | PF16005 | KH-like RNA-binding domain (MOEP19) | KH-like RNA-binding domain | MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ... | Domain |
| B [auth C], E [auth H], M [auth c], P [auth h] | PF16005 | KH-like RNA-binding domain (MOEP19) | KH-like RNA-binding domain | MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ... | Domain |
| KA [auth A], MA [auth F], SA [auth a], UA [auth f] | PF05729 | NACHT domain (NACHT) | NACHT domain | This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. | Domain |
| KA [auth A], MA [auth F], SA [auth a], UA [auth f] | PF13516 | Leucine Rich repeat (LRR_6) | Leucine Rich repeat | - | Repeat |
| KA [auth A], MA [auth F], SA [auth a], UA [auth f] | PF17776 | NLRC4 helical domain HD2 (NLRC4_HD2) | NLRC4 helical domain HD2 | This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. | Domain |
| KA [auth A], MA [auth F], SA [auth a], UA [auth f] | PF17779 | NOD2 winged helix domain (WHD_NOD2) | NOD2 winged helix domain | This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. | Domain |
| JA [auth M], RA [auth m] | PF00091 | Tubulin/FtsZ family, GTPase domain (Tubulin) | Tubulin/FtsZ family, GTPase domain | This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ... | Domain |
| JA [auth M], RA [auth m] | PF03953 | Tubulin C-terminal domain (Tubulin_C) | Tubulin C-terminal domain | This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ... | Domain |
| IA [auth L], QA [auth l] | PF00091 | Tubulin/FtsZ family, GTPase domain (Tubulin) | Tubulin/FtsZ family, GTPase domain | This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ... | Domain |
| IA [auth L], QA [auth l] | PF03953 | Tubulin C-terminal domain (Tubulin_C) | Tubulin C-terminal domain | This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ... | Domain |
| GA [auth N], OA [auth n] | PF05729 | NACHT domain (NACHT) | NACHT domain | This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. | Domain |
| GA [auth N], OA [auth n] | PF13516 | Leucine Rich repeat (LRR_6) | Leucine Rich repeat | - | Repeat |
| GA [auth N], OA [auth n] | PF17776 | NLRC4 helical domain HD2 (NLRC4_HD2) | NLRC4 helical domain HD2 | This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. | Domain |
| GA [auth N], OA [auth n] | PF17779 | NOD2 winged helix domain (WHD_NOD2) | NOD2 winged helix domain | This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. | Domain |
| PF08527 | Protein-arginine deiminase (PAD) middle domain (PAD_M) | Protein-arginine deiminase (PAD) middle domain | This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold. | Domain | |
| PF03068 | Protein-arginine deiminase (PAD) (PAD) | Protein-arginine deiminase (PAD) | - | Family | |
| PF08526 | Protein-arginine deiminase (PAD) N-terminal domain (PAD_N) | Protein-arginine deiminase (PAD) N-terminal domain | This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold. | Domain |














