9W2H | pdb_00009w2h

Cryo-EM structure of EB1002-bound neurokinin 2 receptor (NK2R) in complex with miniGs/q70

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth R]	PF00001	7 transmembrane receptor (rhodopsin family) (7tm_1)	7 transmembrane receptor (rhodopsin family)	This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...	This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G]	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	protein binding binding G-protein beta-subunit binding	cellular response to nitrogen compound cellular response to stimulus response to dopamine regulation of cellular process response to stimulus signaling cellular response to dopamine response to monoamine cell communication response to catecholamine adenylate cyclase-activating dopamine receptor signaling pathway cellular response to catecholamine stimulus signal transduction regulation of biological process cellular response to nitrogen compound cellular response to stimulus response to dopamine regulation of cellular process response to stimulus signaling cellular response to dopamine response to monoamine cell communication response to catecholamine adenylate cyclase-activating dopamine receptor signaling pathway cellular response to catecholamine stimulus signal transduction regulation of biological process G protein-coupled dopamine receptor signaling pathway biological regulation response to oxygen-containing compound response to nitrogen compound adenylate cyclase-activating G protein-coupled receptor signaling pathway cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical adenylate cyclase-modulating G protein-coupled receptor signaling pathway cellular process G protein-coupled receptor signaling pathway response to ketone response to prostaglandin response to lipid response to endogenous stimulus response to alcohol cellular response to prostaglandin stimulus cellular response to endogenous stimulus cellular response to prostaglandin E stimulus cellular response to alcohol response to hormone cellular response to lipid response to prostaglandin E cellular response to ketone cellular response to hormone stimulus	cellular anatomical structure membrane protein-containing complex extrinsic component of plasma membrane catalytic complex plasma membrane protein complex cytoplasmic side of membrane plasma membrane membrane protein complex heterotrimeric G-protein complex side of membrane cell periphery cytoplasmic side of plasma membrane GTPase complex cellular anatomical structure membrane protein-containing complex extrinsic component of plasma membrane catalytic complex plasma membrane protein complex cytoplasmic side of membrane plasma membrane membrane protein complex heterotrimeric G-protein complex side of membrane cell periphery cytoplasmic side of plasma membrane GTPase complex extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle synapse cell junction
B [auth R]	Substance-K receptor	peptide receptor activity molecular transducer activity G protein-coupled receptor activity G protein-coupled peptide receptor activity signaling receptor activity transmembrane signaling receptor activity tachykinin receptor activity neuropeptide receptor activity substance K receptor activity	regulation of localization regulation of biological process transport regulation of transport regulation of monoatomic ion transport biological regulation positive regulation of biological process establishment of localization localization positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport establishment of protein localization nitrogen compound transport regulation of localization regulation of biological process transport regulation of transport regulation of monoatomic ion transport biological regulation positive regulation of biological process establishment of localization localization positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport establishment of protein localization nitrogen compound transport signaling hormone secretion cell communication protein localization to extracellular region peptide secretion secretion by cell signal release regulation of biological quality intracellular protein localization secretion regulation of hormone levels prolactin secretion establishment of protein localization to extracellular region cell-cell signaling export from cell protein secretion peptide transport protein transport peptide hormone secretion macromolecule localization hormone transport cellular process intestine smooth muscle contraction multicellular organismal process gastro-intestinal system smooth muscle contraction system process smooth muscle contraction phasic smooth muscle contraction muscle contraction muscle system process negative regulation of luteinizing hormone secretion regulation of hormone secretion regulation of cellular process gonadotropin secretion negative regulation of signaling regulation of system process negative regulation of biological process negative regulation of transport negative regulation of cell communication regulation of secretion by cell negative regulation of secretion regulation of luteinizing hormone secretion luteinizing hormone secretion negative regulation of hormone secretion negative regulation of cellular process regulation of multicellular organismal process negative regulation of secretion by cell regulation of signaling regulation of gonadotropin secretion regulation of secretion endocrine process negative regulation of gonadotropin secretion regulation of cell communication negative regulation of multicellular organismal process regulation of endocrine process positive regulation of smooth muscle contraction positive regulation of uterine smooth muscle contraction regulation of muscle system process uterine smooth muscle contraction regulation of smooth muscle contraction regulation of muscle contraction positive regulation of muscle contraction regulation of uterine smooth muscle contraction positive regulation of multicellular organismal process cellular response to stimulus response to stimulus adenylate cyclase-activating G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction response to electrical stimulus response to abiotic stimulus positive regulation of cell communication positive regulation of neurotransmitter secretion positive regulation of amine transport acetylcholine secretion, neurotransmission establishment of localization in cell positive regulation of acetylcholine secretion, neurotransmission trans-synaptic signaling positive regulation of neurotransmitter transport positive regulation of synaptic transmission, cholinergic neurotransmitter secretion positive regulation of synaptic transmission regulation of acetylcholine secretion, neurotransmission neurotransmitter transport acetate ester transport signal release from synapse acetylcholine transport regulation of trans-synaptic signaling cellular localization modulation of chemical synaptic transmission positive regulation of secretion by cell synaptic signaling positive regulation of secretion acetylcholine secretion positive regulation of cellular process regulation of neurotransmitter transport chemical synaptic transmission amine transport regulation of neurotransmitter secretion anterograde trans-synaptic signaling synaptic transmission, cholinergic regulation of amine transport regulation of synaptic transmission, cholinergic positive regulation of signaling positive regulation of locomotion regulation of cell motility regulation of reproductive process reproductive process regulation of cilium-dependent cell motility positive regulation of flagellated sperm motility cilium or flagellum-dependent cell motility regulation of flagellated sperm motility cilium-dependent cell motility positive regulation of cell motility positive regulation of cilium movement cell motility locomotion positive regulation of reproductive process sperm motility positive regulation of cilium-dependent cell motility regulation of microtubule-based process regulation of microtubule-based movement cilium movement involved in cell motility regulation of cilium movement regulation of locomotion flagellated sperm motility microtubule-based movement microtubule-based process cilium movement regulation of cilium movement involved in cell motility phospholipase C-activating tachykinin receptor signaling pathway phospholipase C-activating G protein-coupled receptor signaling pathway tachykinin receptor signaling pathway regulation of vascular permeability circulatory system process positive regulation of vascular permeability vascular process in circulatory system blood circulation behavior learning learning or memory nervous system process cognition operant conditioning	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection cell periphery plasma membrane membrane sperm midpiece sperm head
C [auth A]	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	-	-	-
D [auth N]	Nanobody 35	-	-	-
E [auth B]	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	protein binding binding enzyme binding GTPase binding protein-containing complex binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity protein binding binding enzyme binding GTPase binding protein-containing complex binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication response to ketone response to prostaglandin response to lipid response to endogenous stimulus response to alcohol cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication response to ketone response to prostaglandin response to lipid response to endogenous stimulus response to alcohol cellular response to prostaglandin stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to prostaglandin E stimulus cellular response to chemical stimulus cellular response to alcohol response to hormone response to chemical cellular response to lipid response to prostaglandin E cellular response to ketone cellular response to hormone stimulus small GTPase-mediated signal transduction Ras protein signal transduction intracellular signal transduction intracellular signaling cassette cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine response to catecholamine adenylate cyclase-activating dopamine receptor signaling pathway cellular response to catecholamine stimulus G protein-coupled dopamine receptor signaling pathway response to nitrogen compound adenylate cyclase-activating G protein-coupled receptor signaling pathway cellular response to monoamine stimulus adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway synaptic signaling cellular response to acetylcholine cell-cell signaling acetylcholine receptor signaling pathway postsynaptic signal transduction G protein-coupled acetylcholine receptor signaling pathway response to acetylcholine	cellular anatomical structure membrane protein-containing complex extrinsic component of plasma membrane catalytic complex plasma membrane protein complex cytoplasmic side of membrane plasma membrane membrane protein complex heterotrimeric G-protein complex side of membrane cell periphery cytoplasmic side of plasma membrane GTPase complex cellular anatomical structure membrane protein-containing complex extrinsic component of plasma membrane catalytic complex plasma membrane protein complex cytoplasmic side of membrane plasma membrane membrane protein complex heterotrimeric G-protein complex side of membrane cell periphery cytoplasmic side of plasma membrane GTPase complex extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor disc membrane photoreceptor outer segment plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle membrane intracellular anatomical structure cytoplasm cytosol vacuolar membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle lysosomal membrane lysosome synapse cell junction
F [auth C]	ASP-LYS-TYR-VAL-GLY-MLE-A1EUR-NH2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G]	IPR001770	G-protein, gamma subunit	Family
A [auth G]	IPR015898	G-protein, gamma subunit-like domain	Domain
A [auth G]	IPR036284	G-protein gamma-like domain superfamily	Homologous Superfamily
B [auth R]	IPR000276	G protein-coupled receptor, rhodopsin-like	Family
B [auth R]	IPR001681	Neurokinin receptor	Family
B [auth R]	IPR017452	GPCR, rhodopsin-like, 7TM	Domain
B [auth R]	IPR000913	Neurokinin NK2 receptor	Family
E [auth B]	IPR019775	WD40 repeat, conserved site	Conserved Site
E [auth B]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
E [auth B]	IPR001632	G-protein beta subunit-like, WD40 repeats	Domain
E [auth B]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
E [auth B]	IPR016346	G-protein subunit beta 1-5	Family
E [auth B]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
E [auth B]	IPR001680	WD40 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth G]	: P59768	pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma sarcoidosis ulcerative colitis adrenal cortex carcinoma breast carcinoma Duchenne muscular dystrophy glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer Sjogren syndrome X-linked mixed deafness with perilymphatic gusher pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma sarcoidosis ulcerative colitis adrenal cortex carcinoma breast carcinoma Duchenne muscular dystrophy glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer Sjogren syndrome X-linked mixed deafness with perilymphatic gusher astrocytic tumor Crohn disease ductal breast carcinoma in situ interstitial cystitis lung carcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma Pick disease primitive neuroectodermal tumor thoracic aortic aneurysm atypical teratoid rhabdoid tumor cystic fibrosis Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma malignant ependymoma osteosarcoma
B [auth R]	: P21452	bronchial disease psoriasis malignant colon neoplasm vascular disease non-alcoholic fatty liver disease
E [auth B]	: P62873	intellectual disability, autosomal dominant 42 melancholia intellectual disability endogenous depression medulloblastoma myopathy ovarian cancer Precursor Cell Lymphoblastic Leukemia Lymphoma Sjogren syndrome anxiety disorder chronic kidney disease juvenile dermatomyositis lung adenocarcinoma neurotic disorder pancreatic ductal adenocarcinoma intellectual disability, autosomal dominant 42 melancholia intellectual disability endogenous depression medulloblastoma myopathy ovarian cancer Precursor Cell Lymphoblastic Leukemia Lymphoma Sjogren syndrome anxiety disorder chronic kidney disease juvenile dermatomyositis lung adenocarcinoma neurotic disorder pancreatic ductal adenocarcinoma subependymal giant cell astrocytoma breast cancer Duchenne muscular dystrophy leukemia, acute lymphocytic, susceptibility to, 1 malignant pancreatic neoplasm myelodysplastic syndrome osteosarcoma plasma cell myeloma rheumatoid arthritis swine influenza childhood acute lymphoblastic leukemia depressive disorder

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
F [auth C]	A1EUR	Parent Component: ALA
F [auth C]	MLE	Parent Component: LEU : AA0337 : N-methyl-L-leucine MOD:00342
F [auth C]	NH2	: AA0337 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 : N-methyl-L-leucine MOD:00342 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.