Annotations: 9VR4

Trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA containing T opposite the crosslink

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	DNA (5'-D(CPCPAPGPGPAP(PED)PGPAPAPGPCP*C)-3')	-	-	-
B	DNA (5'-D(GPGPCPTPTPCPTPTPCPCPTPGP*G)-3')	-	-	-
A	Endonuclease 8	DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity catalytic activity, acting on a nucleic acid DNA nuclease activity DNA endonuclease activity catalytic activity, acting on DNA nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity lyase activity catalytic activity carbon-oxygen lyase activity hydrolase activity, acting on glycosyl bonds oxidized base lesion DNA N-glycosylase activity hydrolase activity DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity catalytic activity, acting on a nucleic acid DNA nuclease activity DNA endonuclease activity catalytic activity, acting on DNA nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity lyase activity catalytic activity carbon-oxygen lyase activity hydrolase activity, acting on glycosyl bonds oxidized base lesion DNA N-glycosylase activity hydrolase activity oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding DNA binding damaged DNA binding nucleic acid binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000214	Zinc finger, DNA glycosylase/AP lyase-type	Domain
A	IPR015887	DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site	Binding Site
A	IPR012319	Formamidopyrimidine-DNA glycosylase, catalytic domain	Domain
A	IPR015886	Formamidopyrimidine-DNA glycosylase, H2TH DNA-binding	Domain
A	IPR035937	Formamidopyrimidine-DNA glycosylase, N-terminal	Homologous Superfamily
A	IPR010663	Zinc finger, FPG/IleRS-type	Domain
A	IPR044091	Nei, N-terminal	Domain
A	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
A	IPR023713	Endonuclease VIII	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C	PED	: AA0494 : N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium MOD:01454