9UMG | pdb_00009umg

Cryo-EM structure of VTC complex(Vtc5/Vtc4/Vtc3/Vtc1)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F	Vacuole transporter chaperone complex subunit 5	-	phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis biosynthetic process polyphosphate biosynthetic process oxoacid metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis biosynthetic process polyphosphate biosynthetic process oxoacid metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process phosphorus metabolic process polyphosphate metabolic process	vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane fungal-type vacuole membrane protein-containing complex vacuolar transporter chaperone complex membrane protein complex intracellular protein-containing complex endoplasmic reticulum endomembrane system
E	Vacuolar transporter chaperone 3 complex subunit 3	protein binding binding calmodulin binding ion binding inositol hexakisphosphate binding alcohol binding anion binding small molecule binding	phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism organelle fusion cellular component organization vacuole fusion organelle organization vacuole organization vacuole fusion, non-autophagic cellular component organization or biogenesis membrane organization engulfment of target by autophagosome autophagosome assembly organelle assembly macroautophagy autophagosome organization cellular component biogenesis cellular component assembly membrane invagination biosynthetic process polyphosphate biosynthetic process oxoacid metabolic process small molecule metabolic process organic acid metabolic process phosphorus metabolic process polyphosphate metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane autophagosome membrane autophagosome cell periphery cell cortex protein-containing complex vacuolar transporter chaperone complex membrane protein complex intracellular protein-containing complex endoplasmic reticulum endomembrane system organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane
D	Vacuolar transporter chaperone complex subunit 4	kinase activity transferase activity polyphosphate kinase activity catalytic activity phosphotransferase activity, phosphate group as acceptor transferase activity, transferring phosphorus-containing groups protein binding binding calmodulin binding ion binding inositol hexakisphosphate binding alcohol binding anion binding small molecule binding	localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism membrane organization localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism membrane organization engulfment of target by autophagosome autophagosome assembly organelle assembly vacuole organization macroautophagy autophagosome organization cellular component biogenesis cellular component organization organelle organization cellular component assembly membrane invagination cellular component organization or biogenesis biosynthetic process polyphosphate biosynthetic process oxoacid metabolic process small molecule metabolic process organic acid metabolic process phosphorus metabolic process polyphosphate metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane autophagosome membrane autophagosome cell periphery cell cortex protein-containing complex vacuolar transporter chaperone complex membrane protein complex intracellular protein-containing complex endoplasmic reticulum endomembrane system organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane
B, C	Vacuolar transporter chaperone complex subunit 1	RNA binding binding nucleic acid binding mRNA binding	localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism organelle fusion localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism organelle fusion cellular component organization vacuole fusion organelle organization vacuole organization vacuole fusion, non-autophagic cellular component organization or biogenesis membrane organization engulfment of target by autophagosome autophagosome assembly organelle assembly macroautophagy autophagosome organization cellular component biogenesis cellular component assembly membrane invagination biosynthetic process polyphosphate biosynthetic process oxoacid metabolic process small molecule metabolic process organic acid metabolic process phosphorus metabolic process polyphosphate metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane autophagosome membrane autophagosome cell periphery cell cortex nuclear membrane nucleus endomembrane system organelle envelope nuclear envelope protein-containing complex vacuolar transporter chaperone complex membrane protein complex intracellular protein-containing complex endoplasmic reticulum organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane
A	Vacuolar transporter chaperone complex subunit 1	RNA binding binding nucleic acid binding mRNA binding	localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism organelle fusion localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process establishment of localization catabolic process autophagy microautophagy metabolic process process utilizing autophagic mechanism organelle fusion cellular component organization vacuole fusion organelle organization vacuole organization vacuole fusion, non-autophagic cellular component organization or biogenesis membrane organization engulfment of target by autophagosome autophagosome assembly organelle assembly macroautophagy autophagosome organization cellular component biogenesis cellular component assembly membrane invagination biosynthetic process polyphosphate biosynthetic process oxoacid metabolic process small molecule metabolic process organic acid metabolic process phosphorus metabolic process polyphosphate metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuolar membrane storage vacuole membrane lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane autophagosome membrane autophagosome cell periphery cell cortex nuclear membrane nucleus endomembrane system organelle envelope nuclear envelope protein-containing complex vacuolar transporter chaperone complex membrane protein complex intracellular protein-containing complex endoplasmic reticulum organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F	IPR004331	SPX domain	Domain
F	IPR051572	Vacuolar Transporter Chaperone Complex Subunit	Family
E	IPR042267	VTC domain superfamily	Homologous Superfamily
E	IPR003807	Domain of unknown function DUF202	Domain
E	IPR004331	SPX domain	Domain
E	IPR018966	VTC domain	Domain
E	IPR051572	Vacuolar Transporter Chaperone Complex Subunit	Family
D	IPR042267	VTC domain superfamily	Homologous Superfamily
D	IPR003807	Domain of unknown function DUF202	Domain
D	IPR004331	SPX domain	Domain
D	IPR018966	VTC domain	Domain
D	IPR051572	Vacuolar Transporter Chaperone Complex Subunit	Family
B, C	IPR003807	Domain of unknown function DUF202	Domain
B, C	IPR051572	Vacuolar Transporter Chaperone Complex Subunit	Family
A	IPR003807	Domain of unknown function DUF202	Domain
A	IPR051572	Vacuolar Transporter Chaperone Complex Subunit	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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Cryo-EM structure of VTC complex(Vtc5/Vtc4/Vtc3/Vtc1)

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

9UMG | pdb_00009umg