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Data API
9U9D
|
pdb_00009u9d
Bipartite Genetically Encoded Biosensor sG-GECO1
External Resource: Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
B
Green fluorescent protein
-
bioluminescence
metabolic process
cellular process
generation of precursor metabolites and energy
-
A
Myosin light chain kinase, smooth muscle, deglutamylated form,Green fluorescent protein,Calmodulin-1
cytoskeletal protein binding
titin binding
protein binding
binding
enzyme regulator activity
protein phosphatase activator activity
enzyme activator activity
phosphatase activator activity
molecular function activator activity
phosphatase regulator activity
molecular function regulator activity
protein phosphatase regulator activity
enzyme binding
adenylate cyclase binding
cytoskeletal protein binding
titin binding
protein binding
binding
enzyme regulator activity
protein phosphatase activator activity
enzyme activator activity
phosphatase activator activity
molecular function activator activity
phosphatase regulator activity
molecular function regulator activity
protein phosphatase regulator activity
enzyme binding
adenylate cyclase binding
phosphatidylinositol 3-kinase binding
channel regulator activity
ion channel regulator activity
calcium channel regulator activity
transporter regulator activity
nitric-oxide synthase regulator activity
molecular function inhibitor activity
transporter inhibitor activity
calcium channel inhibitor activity
ion channel inhibitor activity
channel inhibitor activity
cyclase regulator activity
cyclase activator activity
adenylate cyclase regulator activity
adenylate cyclase activator activity
protein serine/threonine kinase activator activity
kinase activator activity
protein kinase activator activity
protein kinase regulator activity
kinase regulator activity
nitric-oxide synthase binding
cation binding
ion binding
calcium ion binding
metal ion binding
small molecule binding
protein domain specific binding
signaling receptor binding
type 3 metabotropic glutamate receptor binding
glutamate receptor binding
G protein-coupled receptor binding
G protein-coupled glutamate receptor binding
transmembrane transporter binding
kinase binding
protein kinase binding
calcium-dependent protein binding
protein serine/threonine kinase activity
catalytic activity, acting on a protein
kinase activity
protein kinase activity
myosin light chain kinase activity
transferase activity
catalytic activity
phosphotransferase activity, alcohol group as acceptor
transferase activity, transferring phosphorus-containing groups
adenyl ribonucleotide binding
nucleotide binding
purine ribonucleotide binding
purine ribonucleoside triphosphate binding
nucleoside phosphate binding
purine nucleotide binding
anion binding
adenyl nucleotide binding
ATP binding
heterocyclic compound binding
carbohydrate derivative binding
ribonucleotide binding
calmodulin binding
Less
organelle localization by membrane tethering
localization
organelle localization
cellular process
membrane docking
heart process
multicellular organismal process
system process
regulation of biological process
regulation of heart contraction
regulation of system process
biological regulation
circulatory system process
regulation of blood circulation
organelle localization by membrane tethering
localization
organelle localization
cellular process
membrane docking
heart process
multicellular organismal process
system process
regulation of biological process
regulation of heart contraction
regulation of system process
biological regulation
circulatory system process
regulation of blood circulation
regulation of multicellular organismal process
regulation of biological quality
heart contraction
blood circulation
regulation of heart rate
regulation of localization
regulation of calcium ion transport
negative regulation of ion transmembrane transporter activity
regulation of cellular process
negative regulation of calcium ion transmembrane transporter activity
transport
negative regulation of monoatomic ion transport
monoatomic ion transmembrane transport
negative regulation of biological process
negative regulation of ryanodine-sensitive calcium-release channel activity
regulation of transmembrane transporter activity
negative regulation of transport
regulation of monoatomic ion transmembrane transport
negative regulation of transmembrane transport
calcium ion transport
metal ion transport
regulation of calcium ion transmembrane transport
monoatomic cation transmembrane transport
negative regulation of monoatomic ion transmembrane transport
negative regulation of release of sequestered calcium ion into cytosol
negative regulation of cellular process
monoatomic ion transport
negative regulation of cation transmembrane transport
monoatomic cation transport
regulation of metal ion transport
calcium ion transmembrane import into cytosol
regulation of transport
regulation of release of sequestered calcium ion into cytosol
regulation of monoatomic ion transport
negative regulation of transporter activity
negative regulation of molecular function
establishment of localization
negative regulation of calcium ion transport
transmembrane transport
regulation of molecular function
release of sequestered calcium ion into cytosol
regulation of transmembrane transport
regulation of ryanodine-sensitive calcium-release channel activity
regulation of monoatomic cation transmembrane transport
negative regulation of calcium ion transmembrane transport
calcium ion transmembrane transport
response to stimulus
response to metal ion
response to chemical
response to calcium ion
sarcoplasmic reticulum calcium ion transport
release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
release of sequestered calcium ion into cytosol by endoplasmic reticulum
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
cellular component disassembly
catabolic process
protein-containing complex organization
macroautophagy
autophagy
protein-containing complex disassembly
cellular component organization
autophagosome maturation
autophagosome membrane docking
metabolic process
cellular component organization or biogenesis
process utilizing autophagic mechanism
import into cell
cellular localization
regulation of cellular component organization
synaptic vesicle cycle
regulation of synaptic vesicle recycling
vesicle-mediated transport
presynaptic endocytosis
vesicle-mediated transport in synapse
synaptic vesicle recycling
regulation of synaptic vesicle endocytosis
establishment of localization in cell
regulation of endocytosis
synaptic vesicle endocytosis
regulation of vesicle-mediated transport
endocytosis
cellular response to interferon-beta
response to peptide
response to interferon-beta
response to cytokine
cellular response to cytokine stimulus
response to ketone
response to lipid
response to endogenous stimulus
response to alcohol
response to glucocorticoid
response to oxygen-containing compound
response to corticosterone
response to mineralocorticoid
response to corticosteroid
response to hormone
response to steroid hormone
regulation of cytokinesis
regulation of cell cycle process
cytokinesis
regulation of cell division
cell division
cell cycle
regulation of cell cycle
cell cycle process
cellular response to stimulus
cell surface receptor signaling pathway via STAT
cell surface receptor signaling pathway
signaling
cell communication
signal transduction
cell surface receptor signaling pathway via JAK-STAT
cardiac muscle contraction
intracellular signal transduction
intracellular signaling cassette
regulation of cardiac muscle contraction
muscle contraction
regulation of striated muscle contraction
calcium-mediated signaling
regulation of muscle contraction
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
striated muscle contraction
regulation of cardiac muscle contraction by calcium ion signaling
muscle system process
regulation of muscle system process
mitochondrion-endoplasmic reticulum membrane tethering
cell cycle G2/M phase transition
mitotic cell cycle process
G2/M transition of mitotic cell cycle
cell cycle phase transition
mitotic cell cycle
mitotic cell cycle phase transition
regulated exocytosis
modulation of chemical synaptic transmission
synaptic vesicle exocytosis
regulation of regulated secretory pathway
synaptic signaling
regulation of secretion by cell
secretion by cell
signal release
trans-synaptic signaling
regulation of signaling
neurotransmitter secretion
secretion
regulation of neurotransmitter transport
regulation of synaptic vesicle exocytosis
export from cell
cell-cell signaling
neurotransmitter transport
regulation of secretion
chemical synaptic transmission
signal release from synapse
regulation of trans-synaptic signaling
exocytosis
regulation of neurotransmitter secretion
anterograde trans-synaptic signaling
regulation of exocytosis
regulation of cell communication
cell communication by electrical coupling involved in cardiac conduction
cell communication by electrical coupling
regulation of cell communication by electrical coupling involved in cardiac conduction
cardiac conduction
cell communication involved in cardiac conduction
regulation of cell communication by electrical coupling
export across plasma membrane
negative regulation of calcium ion export across plasma membrane
regulation of calcium ion export across plasma membrane
calcium ion export across plasma membrane
biological process involved in interspecies interaction between organisms
immune response
response to other organism
defense response
response to type II interferon
defense response to symbiont
response to external stimulus
cellular response to type II interferon
response to biotic stimulus
immune system process
defense response to other organism
response to stress
innate immune response
response to external biotic stimulus
calcineurin-mediated signaling
positive regulation of cell communication
positive regulation of signal transduction
positive regulation of biological process
positive regulation of receptor signaling pathway via STAT
regulation of signal transduction
positive regulation of receptor signaling pathway via JAK-STAT
positive regulation of response to stimulus
regulation of receptor signaling pathway via JAK-STAT
positive regulation of cellular process
regulation of response to stimulus
regulation of receptor signaling pathway via STAT
positive regulation of signaling
regulation of intracellular signal transduction
regulation of calcium-mediated signaling
regulation of action potential
regulation of cardiac muscle cell action potential
action potential
cardiac muscle cell action potential
regulation of membrane potential
response to amine
response to nitrogen compound
response to amphetamine
establishment of protein localization
establishment of protein localization to membrane
localization within membrane
detection of stimulus
detection of chemical stimulus
detection of calcium ion
smooth muscle contraction
tonic smooth muscle contraction
developmental process
heart development
heart morphogenesis
animal organ development
circulatory system development
multicellular organism development
anatomical structure morphogenesis
anatomical structure development
animal organ morphogenesis
system development
positive regulation of striated muscle contraction
positive regulation of muscle contraction
positive regulation of multicellular organismal process
cardiac muscle cell development
cellular developmental process
cell development
muscle cell differentiation
striated muscle tissue development
muscle structure development
striated muscle cell development
muscle cell development
cell differentiation
cardiac cell development
muscle tissue development
cardiac muscle tissue development
cardiac muscle cell differentiation
tissue development
cardiocyte differentiation
striated muscle cell differentiation
positive regulation of organelle organization
regulation of cell differentiation
cellular component biogenesis
positive regulation of developmental process
cellular anatomical entity morphogenesis
cellular component assembly
sarcomere organization
actin filament-based process
actomyosin structure organization
positive regulation of cytoskeleton organization
positive regulation of supramolecular fiber organization
positive regulation of muscle cell differentiation
regulation of organelle organization
myofibril assembly
regulation of sarcomere organization
regulation of muscle cell differentiation
regulation of supramolecular fiber organization
supramolecular fiber organization
regulation of cytoskeleton organization
regulation of actin filament-based process
positive regulation of cellular component organization
regulation of developmental process
cellular component assembly involved in morphogenesis
membraneless organelle assembly
regulation of striated muscle cell differentiation
positive regulation of cell differentiation
positive regulation of striated muscle cell differentiation
actin cytoskeleton organization
organelle assembly
organelle organization
regulation of actomyosin structure organization
anatomical structure formation involved in morphogenesis
regulation of actin cytoskeleton organization
positive regulation of sarcomere organization
cytoskeleton organization
Less
intracellular organelle
cellular anatomical structure
intracellular anatomical structure
cytoskeleton
spindle
organelle
membraneless organelle
intracellular membraneless organelle
spindle pole
microtubule cytoskeleton
membrane
cytoplasm
cytosol
membrane-bounded organelle
intracellular organelle
cellular anatomical structure
intracellular anatomical structure
cytoskeleton
spindle
organelle
membraneless organelle
intracellular membraneless organelle
spindle pole
microtubule cytoskeleton
membrane
cytoplasm
cytosol
membrane-bounded organelle
cell projection
sperm midpiece
cilium
9+2 motile cilium
sperm flagellum
motile cilium
plasma membrane bounded cell projection
protein-containing complex
transmembrane transporter complex
membrane protein complex
cation channel complex
transporter complex
calcium channel complex
monoatomic ion channel complex
chromatin
chromosome
axon
synapse
neuron projection
axon terminus
presynapse
distal axon
calyx of Held
cell junction
neuron projection terminus
sarcomere
contractile muscle fiber
supramolecular fiber
myofibril
supramolecular polymer
supramolecular complex
intracellular vesicle
transport vesicle membrane
endomembrane system
bounding membrane of organelle
cytoplasmic vesicle
vesicle membrane
synaptic vesicle
synaptic vesicle membrane
vesicle
transport vesicle
exocytic vesicle membrane
intracellular membrane-bounded organelle
cytoplasmic vesicle membrane
secretory vesicle
organelle membrane
exocytic vesicle
mitochondrion
myelin sheath
centrosome
microtubule organizing center
presynaptic cytosol
catalytic complex
growth cone
site of polarized growth
nucleus
membrane-enclosed lumen
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
voltage-gated potassium channel complex
plasma membrane protein complex
plasma membrane
potassium channel complex
cell periphery
Schaffer collateral - CA1 synapse
polymeric cytoskeletal fiber
spindle microtubule
microtubule
postsynapse
postsynaptic cytosol
cell leading edge
lamellipodium
cell division site
cleavage furrow
plasma membrane region
actin filament bundle
actin cytoskeleton
actomyosin
stress fiber
contractile actin filament bundle
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
B
IPR000786
Green fluorescent protein, GFP
Family
B
IPR011584
Green fluorescent protein-related
Family
B
IPR009017
Green fluorescent protein
Homologous Superfamily
A
IPR002048
EF-hand domain
Domain
A
IPR050230
Calmodulin/Myosin light chain/Troponin C-like
Family
A
IPR018247
EF-Hand 1, calcium-binding site
Binding Site
A
IPR011992
EF-hand domain pair
Homologous Superfamily
A
IPR017441
Protein kinase, ATP binding site
Binding Site
A
IPR036179
Immunoglobulin-like domain superfamily
Homologous Superfamily
A
IPR003598
Immunoglobulin subtype 2
Domain
A
IPR000719
Protein kinase domain
Domain
A
IPR015725
Myosin Light Chain Kinase 1, Kinase domain
Domain
A
IPR003599
Immunoglobulin domain subtype
Domain
A
IPR013098
Immunoglobulin I-set
Domain
A
IPR003961
Fibronectin type III
Domain
A
IPR011009
Protein kinase-like domain superfamily
Homologous Superfamily
A
IPR013783
Immunoglobulin-like fold
Homologous Superfamily
A
IPR007110
Immunoglobulin-like domain
Domain
A
IPR008271
Serine/threonine-protein kinase, active site
Active Site
A
IPR036116
Fibronectin type III superfamily
Homologous Superfamily
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