9U93 | pdb_00009u93

Cryo-EM structure of Fusobacterium nucleatum CbpF in complex with human CEACAM5

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth F], D, F [auth E]	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
A [auth C], C [auth B], E [auth A]	PF05662	Coiled stalk of trimeric autotransporter adhesin (YadA_stalk)	Coiled stalk of trimeric autotransporter adhesin	-	Motif
A [auth C], C [auth B], E [auth A]	PF05658	YadA head domain repeat (2 copies) (YadA_head)	YadA head domain repeat (2 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth F], D, F [auth E]	Cell adhesion molecule CEACAM5	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity lipid binding phospholipid binding GPI anchor binding glycolipid binding carbohydrate derivative binding phosphatidylinositol binding	regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death regulation of anoikis regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death regulation of anoikis negative regulation of anoikis anoikis heterophilic cell-cell adhesion cell adhesion cell-cell adhesion regulation of developmental process cellular developmental process negative regulation of muscle cell differentiation regulation of cell differentiation regulation of striated muscle cell differentiation muscle cell differentiation myotube differentiation muscle structure development negative regulation of myotube differentiation cell differentiation regulation of myotube differentiation anatomical structure development negative regulation of cell differentiation developmental process negative regulation of developmental process negative regulation of striated muscle cell differentiation regulation of muscle cell differentiation striated muscle cell differentiation homophilic cell-cell adhesion homotypic cell-cell adhesion	cellular anatomical structure membrane cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical structure membrane cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell surface basal part of cell basal plasma membrane basolateral plasma membrane side of membrane
A [auth C], C [auth B], E [auth A]	Fusobacterium nucleatum CbpF	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell surface cellular anatomical structure cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth F], D, F [auth E]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B [auth F], D, F [auth E]	IPR003598	Immunoglobulin subtype 2	Domain
B [auth F], D, F [auth E]	IPR013106	Immunoglobulin V-set domain	Domain
B [auth F], D, F [auth E]	IPR003599	Immunoglobulin domain subtype	Domain
B [auth F], D, F [auth E]	IPR050831	Carcinoembryonic antigen-related cell adhesion	Family
B [auth F], D, F [auth E]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B [auth F], D, F [auth E]	IPR007110	Immunoglobulin-like domain	Domain
A [auth C], C [auth B], E [auth A]	IPR008635	Trimeric autotransporter adhesin YadA-like, stalk domain	Domain
A [auth C], C [auth B], E [auth A]	IPR008640	Trimeric autotransporter adhesin YadA-like, head domain	Domain
A [auth C], C [auth B], E [auth A]	IPR005594	Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain	Domain
A [auth C], C [auth B], E [auth A]	IPR011049	Serralysin-like metalloprotease, C-terminal	Homologous Superfamily
A [auth C], C [auth B], E [auth A]	IPR045584	Pilin-like	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth F], D, F [auth E]	Pharos: P06731	cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Abortion, Spontaneous breast cancer ductal breast carcinoma in situ lung carcinoma nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous carcinoma breast carcinoma cystic fibrosis lung adenocarcinoma lung disease non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm asthma cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Abortion, Spontaneous breast cancer ductal breast carcinoma in situ lung carcinoma nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous carcinoma breast carcinoma cystic fibrosis lung adenocarcinoma lung disease non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm asthma breast disease digestive system disease lung cancer malignant pancreatic neoplasm pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.