9TQB | pdb_00009tqb

Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth H]	PF10046	Biogenesis of lysosome-related organelles complex-1 subunit 2 (BLOC1_2)	Biogenesis of lysosome-related organelles complex-1 subunit 2	-	Coiled-coil
C [auth F]	PF14712	Snapin/Pallidin (Snapin_Pallidin)	Snapin/Pallidin	-	Family
D [auth E]	PF10241	Uncharacterized conserved protein (KxDL)	Uncharacterized conserved protein	This is a family of short proteins which are conserved over a region of 80 residues. There is a characteristic KxDL motif towards the C-terminus. The function is unknown.	Domain
G [auth C]	PF16088	BLOC-1-related complex sub-unit 7 (BORCS7)	BLOC-1-related complex sub-unit 7	-	Family
H [auth D]	PF10167	BLOC-1-related complex sub-unit 8 (BORCS8)	BLOC-1-related complex sub-unit 8	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G]	Biogenesis of lysosome-related organelles complex 1 subunit 1	-	localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process cellular component biogenesis cellular component organization vesicle organization cellular component assembly cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of gut granule assembly organelle assembly positive regulation of cellular component biogenesis biological regulation regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly gut granule assembly positive regulation of gut granule assembly positive regulation of organelle assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex BLOC complex intracellular protein-containing complex BLOC-1 complex membrane-bounded organelle mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex BLOC complex intracellular protein-containing complex BLOC-1 complex membrane-bounded organelle mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen intracellular organelle organelle lumen organelle mitochondrial intermembrane space organelle envelope lumen organelle envelope mitochondrial envelope
B [auth H]	Biogenesis of lysosome-related organelles complex 1 subunit 2	cytoskeletal protein binding protein binding binding gamma-tubulin binding tubulin binding	localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport organelle localization lysosome localization vacuolar localization positive regulation of organelle organization regulation of cellular process localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport organelle localization lysosome localization vacuolar localization positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process cellular component biogenesis cellular component organization vesicle organization cellular component assembly cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of gut granule assembly organelle assembly positive regulation of cellular component biogenesis biological regulation regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly gut granule assembly positive regulation of gut granule assembly positive regulation of organelle assembly	protein-containing complex BLOC complex intracellular protein-containing complex BLOC-1 complex BORC complex intracellular anatomical structure intracellular membraneless organelle gamma-tubulin complex intracellular organelle microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle protein-containing complex BLOC complex intracellular protein-containing complex BLOC-1 complex BORC complex intracellular anatomical structure intracellular membraneless organelle gamma-tubulin complex intracellular organelle microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule cytoskeleton
C [auth F]	SNAPIN protein homolog	protein binding binding SNARE binding	cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport vesicle-mediated transport cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport vesicle-mediated transport endosomal transport endosome to lysosome transport lysosomal transport vacuolar transport organelle localization lysosome localization vacuolar localization vesicle localization establishment of organelle localization establishment of vesicle localization synaptic vesicle localization synaptic vesicle transport regulated exocytosis signaling synaptic vesicle cycle synaptic vesicle exocytosis cell communication vesicle-mediated transport in synapse synaptic signaling secretion by cell signal release trans-synaptic signaling regulation of biological process neurotransmitter secretion secretion biological regulation cell-cell signaling export from cell neurotransmitter transport chemical synaptic transmission signal release from synapse exocytosis anterograde trans-synaptic signaling regulation of localization regulation of cellular process regulation of protein localization positive regulation of biological process positive regulation of establishment of protein localization positive regulation of protein transport positive regulation of intracellular transport positive regulation of cellular process regulation of intracellular transport regulation of transport regulation of establishment of protein localization regulation of protein transport positive regulation of transport regulation of cellular localization positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport cellular component organization lysosome organization organelle organization vacuole organization lytic vacuole organization cellular component organization or biogenesis positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization cellular component biogenesis vesicle organization cellular component assembly regulation of gut granule assembly organelle assembly positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of organelle organization regulation of organelle assembly gut granule assembly positive regulation of gut granule assembly positive regulation of organelle assembly	protein-containing complex BLOC complex intracellular protein-containing complex BLOC-1 complex membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secretory granule protein-containing complex BLOC complex intracellular protein-containing complex BLOC-1 complex membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle transport vesicle synapse presynapse synaptic vesicle cell junction exocytic vesicle
D [auth E]	KxDL domain-containing protein	-	localization organelle localization lysosome localization vacuolar localization	protein-containing complex BORC complex intracellular protein-containing complex
E [auth A]	BLOC-1-related complex subunit 5	GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	locomotion establishment of organelle localization vesicle cytoskeletal trafficking regulation of localization regulation of cellular process organelle transport along microtubule vesicle transport along microtubule localization positive regulation of anterograde synaptic vesicle transport regulation of synaptic vesicle transport establishment of localization in cell transport along microtubule synaptic vesicle localization regulation of intracellular transport locomotion establishment of organelle localization vesicle cytoskeletal trafficking regulation of localization regulation of cellular process organelle transport along microtubule vesicle transport along microtubule localization positive regulation of anterograde synaptic vesicle transport regulation of synaptic vesicle transport establishment of localization in cell transport along microtubule synaptic vesicle localization regulation of intracellular transport regulation of biological process anterograde axonal transport anterograde synaptic vesicle transport intracellular transport regulation of microtubule-based movement axonal transport establishment of localization synaptic vesicle cytoskeletal transport axo-dendritic transport cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process synaptic vesicle transport cellular localization transport positive regulation of biological process regulation of anterograde synaptic vesicle transport organelle localization positive regulation of vesicle transport along microtubule positive regulation of intracellular transport positive regulation of cellular process vesicle localization positive regulation of synaptic vesicle transport regulation of transport establishment of vesicle localization biological regulation regulation of microtubule-based process regulation of vesicle transport along microtubule synaptic vesicle transport along microtubule regulation of organelle transport along microtubule positive regulation of transport regulation of cellular localization microtubule-based transport cellular process regulation of mitotic cell cycle cell cycle regulation of cell cycle mitotic cell cycle catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis anaphase-promoting complex-dependent catabolic process ubiquitin-dependent protein catabolic process metabolic process macromolecule metabolic process protein metabolic process regulation of eating behavior multicellular organismal process positive regulation of feeding behavior positive regulation of nematode pharyngeal pumping eating behavior positive regulation of eating behavior feeding behavior regulation of behavior behavior positive regulation of behavior regulation of nematode pharyngeal pumping nematode pharyngeal pumping positive regulation of multicellular organismal process regulation of feeding behavior regulation of multicellular organismal process lysosome localization vacuolar localization developmental process regulation of multicellular organism growth regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth positive regulation of multicellular organism growth positive regulation of developmental process multicellular organism growth positive regulation of growth positive regulation of developmental growth regulation of meiotic cell cycle sexual reproduction regulation of reproductive process reproductive process meiotic cell cycle	vacuolar membrane membrane-bounded organelle cytoplasmic side of lysosomal membrane intracellular anatomical structure cytoplasmic side of membrane membrane lytic vacuole vacuole intracellular membrane-bounded organelle side of membrane intracellular organelle lytic vacuole membrane cellular anatomical structure bounding membrane of organelle vacuolar membrane membrane-bounded organelle cytoplasmic side of lysosomal membrane intracellular anatomical structure cytoplasmic side of membrane membrane lytic vacuole vacuole intracellular membrane-bounded organelle side of membrane intracellular organelle lytic vacuole membrane cellular anatomical structure bounding membrane of organelle organelle lysosomal membrane cytoplasm organelle membrane lysosome protein-containing complex BORC complex intracellular protein-containing complex ubiquitin ligase complex catalytic complex nucleus nuclear protein-containing complex transferase complex anaphase-promoting complex cullin-RING ubiquitin ligase complex nuclear ubiquitin ligase complex synapse intracellular vesicle transport vesicle membrane endomembrane system presynapse cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane cell junction vesicle transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle
F [auth B]	BLOC-1-related complex subunit 6 C-terminal helix domain-containing protein	-	localization organelle localization lysosome localization vacuolar localization	protein-containing complex BORC complex intracellular protein-containing complex
G [auth C]	BLOC-1-related complex subunit 7	-	-	protein-containing complex BORC complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure protein-containing complex BORC complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome
H [auth D]	BLOC-1-related complex subunit 8 homolog	-	-	protein-containing complex BORC complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure protein-containing complex BORC complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G]	IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	Family
B [auth H]	IPR019269	Biogenesis of lysosome-related organelles complex-1, subunit 2	Family
C [auth F]	IPR017246	Snapin	Family
C [auth F]	IPR028119	Snapin/Pallidin/Snn1	Family
D [auth E]	IPR019371	KxDL domain	Domain
D [auth E]	IPR039843	KxDL motif-containing protein 1-like	Family
E [auth A]	IPR018780	BLOC-1-related complex subunit 5	Family
F [auth B]	IPR019314	BLOC-1-related complex subunit 6	Family
F [auth B]	IPR046465	BLOC-1-related complex subunit 6, C-terminal helix	Domain
G [auth C]	IPR032143	BLOC-1-related complex subunit 7	Family
H [auth D]	IPR019320	BLOC-1-related complex subunit 8	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.