9TKT | pdb_00009tkt

Mapping the SHP2 allosteric pocket with target-biased covalent fragments

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SH2 domain	8035711	3000197	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Phosphotyrosine protein) phosphatases II	8044348	3000304	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SH2 domain	8035713	3000197	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH2 domain	8035713	3000197	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Phosphotyrosine protein) phosphatases II	8044348	3000304	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH2 domain	8035711	3000197	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PK_Tyr_Ser-Thr	e9tktB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PK_Tyr_Ser-Thr	ECOD (v295.2)
A	ClpB_D2-small	e9tktA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00017	SH2 domain (SH2)	SH2 domain		Domain
A, B	PF00102	Protein-tyrosine phosphatase (Y_phosphatase)	Protein-tyrosine phosphatase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Tyrosine-protein phosphatase non-receptor type 11	phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity protein binding binding signaling receptor binding insulin receptor binding peptide hormone receptor binding hormone receptor binding phosphoprotein binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity protein binding binding signaling receptor binding insulin receptor binding peptide hormone receptor binding hormone receptor binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding cell adhesion molecule binding cadherin binding molecular adaptor activity protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding non-membrane spanning protein tyrosine phosphatase activity protein tyrosine phosphatase activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity signaling adaptor activity	developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development animal gross anatomical part developmental process system development cellular response to stimulus regulation of biological process regulation of cellular process developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development animal gross anatomical part developmental process system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus signal transduction heart development circulatory system development negative regulation of biological process negative regulation of type I interferon production cytokine production negative regulation of cellular process regulation of cytokine production regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process type I interferon production negative regulation of metabolic process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process regulation of type I interferon production atrioventricular canal development regulation of localization import into cell hexose transmembrane transport regulation of D-glucose import across plasma membrane transport positive regulation of biological process carbohydrate import across plasma membrane carbohydrate transport positive regulation of D-glucose transmembrane transport hexose import across plasma membrane localization positive regulation of transmembrane transport positive regulation of cellular process positive regulation of D-glucose import across plasma membrane regulation of transport import across plasma membrane establishment of localization transmembrane transport regulation of transmembrane transport D-glucose import across plasma membrane positive regulation of transport D-glucose transmembrane transport regulation of D-glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport ear development sensory organ development inner ear development cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway negative regulation of cell adhesion mediated by integrin regulation of cell adhesion mediated by integrin regulation of cell adhesion negative regulation of cell adhesion cell adhesion cell adhesion mediated by integrin negative regulation of lymphocyte proliferation regulation of leukocyte activation regulation of cell activation negative regulation of T cell proliferation negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of leukocyte activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation negative regulation of mononuclear cell proliferation cell-cell adhesion regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation ERBB signaling pathway cellular response to nitrogen compound positive regulation of cell communication positive regulation of signal transduction response to peptide hormone regulation of signal transduction insulin receptor signaling pathway regulation of cellular response to insulin stimulus positive regulation of response to stimulus cellular response to endogenous stimulus response to hormone cellular response to hormone stimulus positive regulation of cellular response to insulin stimulus regulation of signaling response to endogenous stimulus regulation of insulin receptor signaling pathway positive regulation of insulin receptor signaling pathway response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus regulation of response to stimulus response to insulin regulation of cell communication cellular response to insulin stimulus positive regulation of signaling regulation of lipopolysaccharide-mediated signaling pathway positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus response to lipid cellular response to lipopolysaccharide response to biotic stimulus lipopolysaccharide-mediated signaling pathway cellular response to biotic stimulus positive regulation of response to external stimulus response to bacterium response to external biotic stimulus response to other organism response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to lipid positive regulation of lipopolysaccharide-mediated signaling pathway response to molecule of bacterial origin epidermal growth factor receptor signaling pathway positive regulation of intracellular signal transduction intracellular signal transduction regulation of intracellular signal transduction immune response-regulating cell surface receptor signaling pathway negative regulation of signaling regulation of antigen receptor-mediated signaling pathway negative regulation of antigen receptor-mediated signaling pathway negative regulation of cell communication immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response positive regulation of immune system process immune response-activating cell surface receptor signaling pathway immune response negative regulation of response to stimulus regulation of T cell receptor signaling pathway T cell receptor signaling pathway negative regulation of signal transduction negative regulation of T cell receptor signaling pathway regulation of immune response antigen receptor-mediated signaling pathway activation of immune response positive regulation of leukocyte cell-cell adhesion positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation positive regulation of leukocyte activation positive regulation of T cell activation positive regulation of cell adhesion lymphocyte costimulation positive regulation of multicellular organismal process T cell costimulation regulation of cellular component organization protein-containing complex organization regulation of cellular component biogenesis cellular component biogenesis cellular component organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis positive regulation of ERK1 and ERK2 cascade intracellular signaling cassette positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade anatomical structure morphogenesis face morphogenesis head morphogenesis face development body morphogenesis regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of interferon-beta production interferon-beta production positive regulation of type I interferon production positive regulation of gene expression positive regulation of interferon-beta production positive regulation of cytokine production neutrophil activation regulation of neutrophil activation negative regulation of neutrophil activation myeloid leukocyte activation granulocyte activation regulation of tube diameter system process regulation of tube size circulatory system process vascular process in circulatory system blood vessel diameter maintenance regulation of biological quality vasodilation blood circulation regulation of anatomical structure size response to fibroblast growth factor cellular response to growth factor stimulus fibroblast growth factor receptor signaling pathway response to growth factor cellular response to fibroblast growth factor stimulus response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process peptidyl-tyrosine dephosphorylation regulation of defense response regulation of type I interferon-mediated signaling pathway interferon-mediated signaling pathway cellular response to type I interferon response to stress regulation of response to stress innate immune response defense response regulation of innate immune response regulation of cytokine-mediated signaling pathway defense response to symbiont regulation of response to cytokine stimulus defense response to other organism type I interferon-mediated signaling pathway response to type I interferon ossification positive regulation of ossification regulation of ossification cellular response to epidermal growth factor stimulus response to epidermal growth factor regulation of cartilage development regulation of chondrocyte differentiation regulation of developmental process connective tissue development cellular developmental process negative regulation of cartilage development negative regulation of chondrocyte differentiation regulation of cell differentiation skeletal system development cell differentiation negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of developmental process tissue development chondrocyte differentiation cartilage development regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production genitalia development reproductive system development reproductive process sex differentiation developmental process involved in reproduction reproductive structure development	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle anchoring junction cell junction focal adhesion cell-substrate junction nucleus cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle anchoring junction cell junction focal adhesion cell-substrate junction nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen nucleoplasm protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A, B	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A, B	IPR000980	SH2 domain	Domain
A, B	IPR012152	Protein-tyrosine phosphatase, non-receptor type-6, -11	Family
A, B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A, B	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A, B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q06124	Noonan syndrome with multiple lentigines Noonan syndrome Costello syndrome cardiofaciocutaneous syndrome juvenile myelomonocytic leukemia metachondromatosis Ollier disease neuroblastoma astrocytic tumor fibrillary astrocytoma acute myeloid leukemia adenocarcinoma anaplastic astrocytoma pilocytic astrocytoma squamous cell carcinoma Noonan syndrome with multiple lentigines Noonan syndrome Costello syndrome cardiofaciocutaneous syndrome juvenile myelomonocytic leukemia metachondromatosis Ollier disease neuroblastoma astrocytic tumor fibrillary astrocytoma acute myeloid leukemia adenocarcinoma anaplastic astrocytoma pilocytic astrocytoma squamous cell carcinoma hereditary multiple osteochondromas childhood cerebral astrocytoma LEOPARD syndrome 1 protoplasmic astrocytoma subependymal giant cell astrocytoma tubular adenocarcinoma gemistocytic astrocytoma Neurodevelopmental Disorders granular cell carcinoma Noonan syndrome 1 juvenile pilocytic astrocytoma leukemia malignant ependymoma systemic lupus erythematosus Down syndrome myelodysplastic syndrome myositis glioblastoma neurofibromatosis type 1 heart disease hydrops fetalis pancreatic ductal adenocarcinoma breast carcinoma Charcot-Marie-Tooth disease large cell medulloblastoma prostate carcinoma cleft lip lung adenocarcinoma cribriform carcinoma malignant glioma systemic sclerosis dermatomyositis Gaucher disease hematologic disease oligodendroglioma osteogenesis imperfecta hypertrophic cardiomyopathy peripheral arterial disease cancer plasma cell myeloma congenital anemia Maffucci syndrome cribriform carcinoma of breast medulloblastoma diffuse astrocytoma multiple pterygium syndrome myocardial infarction hematopoietic and lymphoid system neoplasm hereditary spastic paraplegia osteosarcoma astrocytoma (excluding glioblastoma) intellectual disability Pick disease carcinoma of esophagus progressive supranuclear palsy cerebral astrocytoma chronic myelomonocytic leukemia rheumatoid arthritis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.