Annotations: 9TFU

Crystal structure of beta-TrCP bound by monophosphorylated ATF4 degron peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	WD40 repeat-like	8034572	3001694	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Cyclic AMP-dependent transcription factor ATF-4	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding cAMP response element binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding promoter-specific chromatin binding DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding cAMP response element binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding promoter-specific chromatin binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity identical protein binding protein binding transcription factor binding general transcription initiation factor binding cAMP response element binding protein binding DNA-binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein heterodimerization activity protein dimerization activity kinase binding enzyme binding protein kinase binding LRR domain binding protein domain specific binding leucine zipper domain binding	cellular response to stimulus cellular response to metal ion response to manganese-induced endoplasmic reticulum stress response to stimulus cellular response to manganese ion cellular response to chemical stress cellular response to chemical stimulus cellular response to stress response to metal ion response to stress response to chemical cellular process response to manganese ion response to endoplasmic reticulum stress cellular response to stimulus cellular response to metal ion response to manganese-induced endoplasmic reticulum stress response to stimulus cellular response to manganese ion cellular response to chemical stress cellular response to chemical stimulus cellular response to stress response to metal ion response to stress response to chemical cellular process response to manganese ion response to endoplasmic reticulum stress developmental process multicellular organismal process ossification bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cellular response to nutrient levels response to nutrient levels response to starvation cellular response to glucose starvation cellular response to starvation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process translational initiation protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of translational initiation in response to stress regulation of translational initiation regulation of protein metabolic process negative regulation of metabolic process negative regulation of translational initiation primary metabolic process translation negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process signaling cell-cell signaling gamma-aminobutyric acid signaling pathway cell communication inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis response to toxic substance response to oxidative stress cellular response to oxidative stress rhythmic process circadian regulation of gene expression circadian rhythm cellular developmental process hemopoiesis cell development embryo development multicellular organism development embryonic hemopoiesis cell differentiation embryonic organ development RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription sensory organ development visual system development cell morphogenesis epithelial cell differentiation eye morphogenesis lens morphogenesis in camera-type eye animal organ morphogenesis sensory system development system development camera-type eye morphogenesis lens fiber cell morphogenesis epithelium development eye development lens fiber cell development anatomical structure morphogenesis epithelial cell development sensory organ morphogenesis camera-type eye development lens fiber cell differentiation lens development in camera-type eye mRNA transcription by RNA polymerase II mRNA transcription mRNA metabolic process transcription by RNA polymerase II monosaccharide metabolic process carbohydrate metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process small molecule metabolic process glucose metabolic process intrinsic apoptotic signaling pathway in response to oxidative stress regulation of oxidative stress-induced intrinsic apoptotic signaling pathway negative regulation of neuron apoptotic process negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of programmed cell death negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway negative regulation of signal transduction neuron intrinsic apoptotic signaling pathway in response to oxidative stress apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway regulation of cell communication regulation of apoptotic signaling pathway regulation of multicellular organismal development regulation of developmental process regulation of biomineral tissue development positive regulation of developmental process positive regulation of biomineral tissue development regulation of multicellular organismal process integrated stress response signaling intracellular signaling cassette negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process cellular response to amino acid starvation response to amino acid starvation regulation of localization sodium-dependent phosphate transport regulation of transport transport regulation of phosphate transport regulation of sodium-dependent phosphate transport establishment of localization localization positive regulation of transport positive regulation of sodium-dependent phosphate transport phosphate ion transport inorganic anion transport positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process cellular response to topologically incorrect protein endoplasmic reticulum unfolded protein response cellular response to unfolded protein response to unfolded protein response to topologically incorrect protein HRI-mediated signaling regulation of osteoblast differentiation regulation of cell differentiation osteoblast differentiation negative regulation of potassium ion transport regulation of potassium ion transport negative regulation of monoatomic ion transport regulation of monoatomic ion transport negative regulation of transport metal ion transport monoatomic ion transport potassium ion transport monoatomic cation transport regulation of metal ion transport regulation of cytokine production cytokine production regulation of vascular endothelial growth factor production vascular endothelial growth factor production positive regulation of multicellular organismal process positive regulation of vascular endothelial growth factor production positive regulation of cytokine production cellular response to leucine starvation nervous system development generation of neurons neurogenesis neuron differentiation PERK-mediated unfolded protein response ER-nucleus signaling pathway response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to light stimulus response to radiation cellular response to abiotic stimulus cellular response to UV regulation of synaptic plasticity trans-synaptic signaling modulation of chemical synaptic transmission chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of biological quality intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress transcription by RNA polymerase I positive regulation of transcription by RNA polymerase I regulation of transcription by RNA polymerase I muscle cell apoptotic process positive regulation of smooth muscle cell apoptotic process smooth muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of smooth muscle cell apoptotic process positive regulation of muscle cell apoptotic process vascular associated smooth muscle cell apoptotic process positive regulation of vascular associated smooth muscle cell apoptotic process regulation of vascular associated smooth muscle cell apoptotic process negative regulation of cold-induced thermogenesis adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis negative regulation of multicellular organismal process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm cytosol chromatin chromosome cell projection neuron projection plasma membrane bounded cell projection RNA polymerase II transcription regulator complex protein-containing complex nuclear protein-containing complex transcription regulator complex CHOP-ATF4 complex ATF4-CREB1 transcription factor complex centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton ATF1-ATF4 transcription factor complex nuclear periphery inclusion body Lewy body Lewy body core cell leading edge plasma membrane membrane leading edge membrane somatodendritic compartment neuron projection membrane cell periphery dendrite membrane dendrite dendritic tree plasma membrane region cell projection membrane
A	F-box/WD repeat-containing protein 1A	enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity phosphoprotein binding protein binding binding protein phosphorylated amino acid binding beta-catenin binding ligase activity protein dimerization activity	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction Wnt signaling pathway protein destabilization regulation of protein stability regulation of biological quality rhythmic process circadian rhythm regulation of circadian rhythm protein dephosphorylation macromolecule modification dephosphorylation phosphate-containing compound metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process protein ubiquitination post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process developmental process epithelium development cell population proliferation mammary gland development gland development animal organ development tissue development mammary gland epithelium development anatomical structure development epithelial cell proliferation mammary gland epithelial cell proliferation negative regulation of signaling negative regulation of biological process negative regulation of cell communication negative regulation of smoothened signaling pathway negative regulation of cellular process regulation of smoothened signaling pathway negative regulation of response to stimulus negative regulation of signal transduction smoothened signaling pathway non-canonical NF-kappaB signal transduction intracellular signal transduction intracellular signaling cassette positive regulation of protein metabolic process regulation of protein metabolic process positive regulation of biological process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process regulation of proteolysis proteolysis positive regulation of proteolysis positive regulation of macromolecule metabolic process regulation of metabolic process positive regulation of cellular process protein polyubiquitination positive regulation of circadian rhythm immune response-regulating cell surface receptor signaling pathway regulation of antigen receptor-mediated signaling pathway negative regulation of antigen receptor-mediated signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process immune response-activating cell surface receptor signaling pathway immune response regulation of T cell receptor signaling pathway T cell receptor signaling pathway negative regulation of T cell receptor signaling pathway negative regulation of immune system process immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response protein K48-linked ubiquitination positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription branching involved in mammary gland duct morphogenesis multicellular organismal process mammary gland morphogenesis branching morphogenesis of an epithelial tube multicellular organism development tube morphogenesis gland morphogenesis animal organ morphogenesis epithelial tube morphogenesis tube development morphogenesis of an epithelium mammary gland duct morphogenesis tissue morphogenesis anatomical structure morphogenesis morphogenesis of a branching structure morphogenesis of a branching epithelium regulation of catabolic process regulation of proteasomal protein catabolic process regulation of protein catabolic process cell cycle regulation of cell cycle negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process canonical NF-kappaB signal transduction regulation of intracellular signal transduction regulation of canonical NF-kappaB signal transduction	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR004827	Basic-leucine zipper domain	Domain
B	IPR046347	Basic-leucine zipper domain superfamily	Homologous Superfamily
A	IPR019775	WD40 repeat, conserved site	Conserved Site
A	IPR001810	F-box domain	Domain
A	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A	IPR050995	WD repeat and F-box domain-containing protein	Family
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A	IPR021977	D domain of beta-TrCP	Domain
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR001680	WD40 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: P18848	invasive ductal breast carcinoma Necrosis bipolar disorder fatty liver disease Tourette syndrome depressive disorder schizophrenia autism spectrum disorder
A	: Q9Y297	atypical teratoid rhabdoid tumor malignant glioma osteosarcoma split hand-foot malformation glioblastoma malignant mesothelioma ovarian cancer large cell medulloblastoma medulloblastoma psoriasis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	SEP	Parent Component: SER : AA0037 : O-phospho-L-serine MOD:00046

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.