Annotations: 9TB0

Complex structure of AMPylated EF-Tu-T62A bound to SoFic-H198A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ras-like P-loop GTPases	8056349	3002022	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EF-Tu post-G domain-like	8056352	3002024	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EF-Tu post-G domain-like	8056350	3002024	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EF-Tu post-G domain-like	8056352	3002024	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8056349	3002022	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EF-Tu post-G domain-like	8056350	3002024	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00009	Elongation factor Tu GTP binding domain (GTP_EFTU)	Elongation factor Tu GTP binding domain	This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.	Domain
C, D	PF03143	Elongation factor Tu C-terminal domain (GTP_EFTU_D3)	Elongation factor Tu C-terminal domain	Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2].	Domain
C, D	PF03144	Elongation factor Tu domain 2 (GTP_EFTU_D2)	Elongation factor Tu domain 2	Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...	Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.	Domain
A, B	PF02661	Fic/DOC family (Fic)	Fic/DOC family	-	Family
A, B	PF13784	Fic/DOC family N-terminal (Fic_N)	Fic/DOC family N-terminal	-	Family
A, B	PF21248	Protein adenylyltransferase SoFic-like, C-terminal domain (SoFic-like_C)	Protein adenylyltransferase SoFic-like, C-terminal domain	This domain is found at the C-terminal end of Protein adenylyltransferase SoFic from Shewanella oneidensis and similar bacterial sequences. SoFic mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins. This ...	This domain is found at the C-terminal end of Protein adenylyltransferase SoFic from Shewanella oneidensis and similar bacterial sequences. SoFic mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins. This is a winged-helix DNA-binding domain often found associated with Pfam:PF02661 [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Elongation factor Tu 1	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding guanosine tetraphosphate binding guanyl nucleotide binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding purine nucleotide binding anion binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding guanosine tetraphosphate binding guanyl nucleotide binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding translation factor activity translation elongation factor activity GTP binding purine ribonucleoside triphosphate binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	primary metabolic process translation gene expression macromolecule biosynthetic process protein biosynthetic process biosynthetic process translational elongation metabolic process cellular process macromolecule metabolic process protein metabolic process	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm protein-containing complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex
A, B	Protein adenylyltransferase SoFic	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding identical protein binding protein binding protein homodimerization activity protein dimerization activity adenylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity AMPylase activity transferase activity, transferring phosphorus-containing groups	protein nucleotidylation protein adenylylation macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR005225	Small GTP-binding domain	Domain
C, D	IPR000795	Translational (tr)-type GTP-binding domain	Domain
C, D	IPR033720	Elongation factor Tu, domain 2	Domain
C, D	IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Homologous Superfamily
C, D	IPR031157	Tr-type G domain, conserved site	Conserved Site
C, D	IPR004541	Translation elongation factor EFTu/EF1A, bacterial/organelle	Family
C, D	IPR004161	Translation elongation factor EFTu-like, domain 2	Domain
C, D	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
C, D	IPR004160	Translation elongation factor EFTu/EF1A, C-terminal	Domain
C, D	IPR050055	Elongation factor Tu GTPase	Family
C, D	IPR041709	Elongation factor Tu (EF-Tu), GTP-binding domain	Domain
C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR026287	Protein adenylyltransferase SoFic-like	Family
A, B	IPR048770	Adenylyltransferase SoFic-like, C-terminal domain	Domain
A, B	IPR040198	Fido domain-containing protein	Family
A, B	IPR025758	Fic/DOC N-terminal	Domain
A, B	IPR036597	Fido-like domain superfamily	Homologous Superfamily
A, B	IPR003812	Fido domain	Domain