Annotations: 9T8N

E. coli 70S ribosome from delta-10 strain, PTC class 3

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth e]	Ribosomal_S18	e9t8ne1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
H [auth k]	Ribosomal_S18	e9t8nk1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
I [auth l]	Ribosomal_S18	e9t8nl1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
J [auth q]	Ribosomal_S18	e9t8nq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
K [auth r]	Ribosomal_S18	e9t8nr1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
L [auth v]	Ribosomal_S18	e9t8nv1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
F [auth d]	Ribosomal_S18	e9t8nd1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
E [auth c]	Ribosomal_S18	e9t8nc1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
M [auth z]	Ribosomal_S18	e9t8nz1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth Z]	tRNA(fMet)	-	-	-
C [auth a]	23S rRNA	-	-	-
D [auth b]	5S rRNA	-	-	-
G [auth e]	Large ribosomal subunit protein uL4	enzyme regulator activity molecular function inhibitor activity molecular function regulator activity nuclease inhibitor activity enzyme inhibitor activity endoribonuclease inhibitor activity ribonuclease inhibitor activity DNA binding binding nucleic acid binding transcription regulator activity RNA-binding transcription regulator activity RNA binding rRNA binding enzyme regulator activity molecular function inhibitor activity molecular function regulator activity nuclease inhibitor activity enzyme inhibitor activity endoribonuclease inhibitor activity ribonuclease inhibitor activity DNA binding binding nucleic acid binding transcription regulator activity RNA-binding transcription regulator activity RNA binding rRNA binding mRNA 5'-UTR binding mRNA binding translation regulator activity translation repressor activity structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process protein biosynthetic process post-transcriptional regulation of gene expression negative regulation of translation protein metabolic process negative regulation of protein metabolic process regulation of protein metabolic process translation negative regulation of gene expression negative regulation of cytoplasmic translation regulation of translation cytoplasmic translation regulation of cytoplasmic translation response to stimulus response to chemical response to antibiotic DNA-templated transcription termination protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly positive regulation of metabolic process positive regulation of macromolecule metabolic process cellular component disassembly positive regulation of RNA metabolic process regulation of termination of DNA-templated transcription positive regulation of cellular component organization regulation of cellular component organization positive regulation of DNA-templated transcription positive regulation of biological process transcriptional attenuation positive regulation of termination of DNA-templated transcription cellular component organization positive regulation of biosynthetic process cellular component organization or biogenesis positive regulation of protein-containing complex disassembly positive regulation of cellular process protein-containing complex organization positive regulation of RNA biosynthetic process ribonucleoprotein complex biogenesis organelle assembly membraneless organelle assembly cellular component biogenesis ribosome biogenesis organelle organization cellular component assembly ribosome assembly	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit cytoplasm cytosol cytosolic large ribosomal subunit protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit cytoplasm cytosol cytosolic large ribosomal subunit cytosolic ribosome
H [auth k]	Large ribosomal subunit protein uL15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
I [auth l]	Large ribosomal subunit protein uL16	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
J [auth q]	Large ribosomal subunit protein bL21	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
K [auth r]	Large ribosomal subunit protein uL22	RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly cellular process cellular component organization or biogenesis ribosome assembly primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to antibiotic cytosolic ribosome assembly	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit cytoplasm cytosol cytosolic large ribosomal subunit protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit cytoplasm cytosol cytosolic large ribosomal subunit cytosolic ribosome
L [auth v]	Large ribosomal subunit protein bL27	RNA binding binding rRNA binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding tRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly cellular process cellular component organization or biogenesis ribosome assembly primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process regulation of biological process regulation of cellular process positive regulation of cellular component biogenesis biological regulation positive regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis positive regulation of ribosome biogenesis positive regulation of cellular process cytosolic ribosome assembly regulation of growth regulation of cellular component organization growth regulation of cell growth cell growth	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
F [auth d]	Large ribosomal subunit protein uL3	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
E [auth c]	Large ribosomal subunit protein uL2	RNA binding binding rRNA binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of DNA-templated DNA replication initiation regulation of cellular process negative regulation of biological process primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of DNA-templated DNA replication initiation regulation of cellular process negative regulation of biological process negative regulation of DNA-templated DNA replication initiation regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of DNA-templated DNA replication negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process DNA-templated DNA replication regulation of biological process negative regulation of DNA replication DNA replication initiation negative regulation of metabolic process biological regulation DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process DNA replication regulation of DNA-templated DNA replication negative regulation of DNA metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
M [auth z]	Large ribosomal subunit protein bL32	structural molecule activity structural constituent of ribosome	response to stimulus response to radiation response to abiotic stimulus primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process response to stimulus response to radiation response to abiotic stimulus primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process response to oxidative stress response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
A [auth Y]	tRNA(Phe)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth e]	IPR013005	Large ribosomal subunit protein uL4-like	Family
G [auth e]	IPR002136	Large ribosomal subunit protein uL4	Family
G [auth e]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
H [auth k]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
H [auth k]	IPR030878	Large ribosomal subunit protein uL15	Family
H [auth k]	IPR001196	Large ribosomal subunit protein uL15, conserved site	Conserved Site
H [auth k]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
H [auth k]	IPR005749	Large ribosomal subunit protein uL15, bacteria	Family
I [auth l]	IPR000114	Large ribosomal subunit protein uL16, bacteria	Family
I [auth l]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
I [auth l]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
I [auth l]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
I [auth l]	IPR047873	Large ribosomal subunit protein uL16	Family
J [auth q]	IPR028909	Large ribosomal subunit protein bL21-like	Family
J [auth q]	IPR001787	Large ribosomal subunit protein bL21	Family
J [auth q]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
J [auth q]	IPR018258	Large ribosomal subunit protein bL21, conserved site	Conserved Site
K [auth r]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
K [auth r]	IPR001063	Large ribosomal subunit protein uL22	Family
K [auth r]	IPR047867	Large ribosomal subunit protein uL22, bacteria/organella	Family
K [auth r]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
K [auth r]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
L [auth v]	IPR001684	Large ribosomal subunit protein bL27	Family
L [auth v]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
F [auth d]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
F [auth d]	IPR019927	Large ribosomal subunit protein uL3, bacteria/organella	Family
F [auth d]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
F [auth d]	IPR000597	Large ribosomal subunit protein uL3	Family
E [auth c]	IPR005880	Large ribosomal subunit protein uL2, bacteria/organella	Family
E [auth c]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
E [auth c]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
E [auth c]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
E [auth c]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
E [auth c]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
E [auth c]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
E [auth c]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
E [auth c]	IPR002171	Large ribosomal subunit protein uL2	Family
M [auth z]	IPR002677	Large ribosomal subunit protein bL32	Family
M [auth z]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
M [auth z]	IPR044957	Large ribosomal subunit protein bL32, bacteria	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth Z]	4SU	Parent Component: U
B [auth Z]	5MU	Parent Component: U
B [auth Z]	H2U	Parent Component: U
B [auth Z]	OMC	Parent Component: C
B [auth Z]	PSU	Parent Component: U
C [auth a]	1MG	Parent Component: G
C [auth a]	2MG	Parent Component: G
C [auth a]	3TD	Parent Component: U
C [auth a]	5MC	Parent Component: C
C [auth a]	5MU	Parent Component: U
C [auth a]	6MZ	Parent Component: A
C [auth a]	H2U	Parent Component: U
C [auth a]	PSU	Parent Component: U
I [auth l]	4D4	Parent Component: ARG
I [auth l]	MS6	Parent Component: MET
F [auth d]	MEQ	Parent Component: GLN : AA0071 : N5-methyl-L-glutamine MOD:00080
A [auth Y]	3AU	Parent Component: U : AA0071
A [auth Y]	4SU	Parent Component: U : AA0071
A [auth Y]	5MU	Parent Component: U : AA0071
A [auth Y]	7MG	Parent Component: G : AA0071
A [auth Y]	H2U	Parent Component: U : AA0071
A [auth Y]	MIA	Parent Component: A : AA0071
A [auth Y]	PSU	Parent Component: U : AA0071

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T8N | pdb_00009t8n

E. coli 70S ribosome from delta-10 strain, PTC class 3

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Protein Modification Annotation