9T66 | pdb_00009t66

Complex linking two repeat units of a cytoplasmic lattice filament


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
V [auth j]SCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I) 8052235 3001023 SCOP2B (2022-06-29)
O [auth S]SCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I) 8052235 3001023 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
CA [auth T],
HA [auth W],
IA [auth k],
NA [auth m]
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domainDomain
CA [auth T],
HA [auth W],
IA [auth k],
NA [auth m]
PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domainDomain
AA [auth Y],
BA [auth n]
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
AA [auth Y],
BA [auth n]
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
AA [auth Y],
BA [auth n]
PF02758PAAD/DAPIN/Pyrin domain (PYRIN)PAAD/DAPIN/Pyrin domainThis domain is predicted to contain 6 alpha helices and to have the same fold as the Pfam:PF00531 domain. This similarity may mean that this is a protein-protein interaction domain. Domain
AA [auth Y],
BA [auth n]
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
AA [auth Y],
BA [auth n]
PF17779NOD2 winged helix domain (WHD_NOD2)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain
O [auth S],
V [auth j]
PF16005KH-like RNA-binding domain (MOEP19)KH-like RNA-binding domainMOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ...MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage [1].
Domain
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
PF16005KH-like RNA-binding domain (MOEP19)KH-like RNA-binding domainMOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ...MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage [1].
Domain
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domainDomain
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domainDomain
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
PF08527Protein-arginine deiminase (PAD) middle domain (PAD_M)Protein-arginine deiminase (PAD) middle domainThis family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold. Domain
PF16005KH-like RNA-binding domain (MOEP19)KH-like RNA-binding domainMOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ...MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage [1].
Domain
PF03068Protein-arginine deiminase (PAD) (PAD)Protein-arginine deiminase (PAD)- Family
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domainDomain
PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domainDomain
PF08526Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)Protein-arginine deiminase (PAD) N-terminal domainThis family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold. Domain
PF17779NOD2 winged helix domain (WHD_NOD2)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
PF02758PAAD/DAPIN/Pyrin domain (PYRIN)PAAD/DAPIN/Pyrin domainThis domain is predicted to contain 6 alpha helices and to have the same fold as the Pfam:PF00531 domain. This similarity may mean that this is a protein-protein interaction domain. Domain
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
PF17779NOD2 winged helix domain (WHD_NOD2)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
PF17779NOD2 winged helix domain (WHD_NOD2)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
CA [auth T],
HA [auth W],
IA [auth k],
NA [auth m]
Zinc finger BED domain-containing protein 3
AA [auth Y],
BA [auth n]
NLR family, pyrin domain containing 4F- - -
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
S-phase kinase-associated protein 1
R [auth d],
X [auth p]
Tubulin beta-4B chain
Q [auth c],
W [auth o]
Tubulin alpha-1C chain
O [auth S],
V [auth j]
KH domain-containing protein 3
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
Oocyte-expressed protein homolog
Inactive protein-arginine deiminase type-6
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
Transducin-like enhancer protein 6
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
NACHT, LRR and PYD domains-containing protein 5
A [auth g],
B [auth e],
C [auth s],
D [auth q]
F-box/WD repeat-containing protein---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
CA [auth T],
HA [auth W],
IA [auth k],
NA [auth m]
IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
CA [auth T],
HA [auth W],
IA [auth k],
NA [auth m]
IPR043471Zinc finger BED domain-containing protein 2/3Family
AA [auth Y],
BA [auth n]
IPR011029Death-like domain superfamilyHomologous Superfamily
AA [auth Y],
BA [auth n]
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
AA [auth Y],
BA [auth n]
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
AA [auth Y],
BA [auth n]
IPR050637NLRP family, innate immunity and inflammation regulatorsFamily
AA [auth Y],
BA [auth n]
IPR001611Leucine-rich repeatRepeat
AA [auth Y],
BA [auth n]
IPR004020DAPIN domainDomain
AA [auth Y],
BA [auth n]
IPR041075NOD1/2, winged helix domainDomain
AA [auth Y],
BA [auth n]
IPR007111NACHT nucleoside triphosphataseDomain
AA [auth Y],
BA [auth n]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
IPR016073SKP1 component, POZ domainDomain
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
IPR001232S-phase kinase-associated protein 1-likeFamily
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
IPR036296SKP1-like, dimerisation domain superfamilyHomologous Superfamily
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
IPR016072SKP1 component, dimerisationDomain
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
S [auth f],
T [auth h],
Y [auth r],
Z [auth t]
IPR016897S-phase kinase-associated protein 1Family
R [auth d],
X [auth p]
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
R [auth d],
X [auth p]
IPR017975Tubulin, conserved siteConserved Site
R [auth d],
X [auth p]
IPR023123Tubulin, C-terminalHomologous Superfamily
R [auth d],
X [auth p]
IPR002453Beta tubulinFamily
R [auth d],
X [auth p]
IPR013838Beta tubulin, autoregulation binding siteBinding Site
R [auth d],
X [auth p]
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
R [auth d],
X [auth p]
IPR003008Tubulin/FtsZ, GTPase domainDomain
R [auth d],
X [auth p]
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
R [auth d],
X [auth p]
IPR000217TubulinFamily
R [auth d],
X [auth p]
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
Q [auth c],
W [auth o]
IPR003008Tubulin/FtsZ, GTPase domainDomain
Q [auth c],
W [auth o]
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
Q [auth c],
W [auth o]
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
Q [auth c],
W [auth o]
IPR017975Tubulin, conserved siteConserved Site
Q [auth c],
W [auth o]
IPR002452Alpha tubulinFamily
Q [auth c],
W [auth o]
IPR000217TubulinFamily
Q [auth c],
W [auth o]
IPR023123Tubulin, C-terminalHomologous Superfamily
Q [auth c],
W [auth o]
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
Q [auth c],
W [auth o]
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
O [auth S],
V [auth j]
IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
O [auth S],
V [auth j]
IPR051778KH Domain-Containing Protein 1Family
O [auth S],
V [auth j]
IPR031952KH-like RNA-binding domainDomain
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
IPR051778KH Domain-Containing Protein 1Family
M [auth O],
N [auth R],
P [auth Z],
U [auth i]
IPR031952KH-like RNA-binding domainDomain
IPR013732Protein-arginine deiminase (PAD), N-terminalDomain
IPR013733Protein-arginine deiminase (PAD), central domainDomain
IPR008972CupredoxinHomologous Superfamily
IPR038685PAD, N-terminal domain superfamilyHomologous Superfamily
IPR013530Protein-arginine deiminase, C-terminalDomain
IPR036556Protein-arginine deiminase, central domain superfamilyHomologous Superfamily
IPR004303Protein-arginine deiminaseFamily
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
IPR009146Groucho/transducin-like enhancerFamily
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth N],
GA [auth Q],
KA [auth X],
MA [auth b]
IPR001680WD40 repeatRepeat
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR007111NACHT nucleoside triphosphataseDomain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR001611Leucine-rich repeatRepeat
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR041075NOD1/2, winged helix domainDomain
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
DA [auth M],
FA [auth P],
JA [auth U],
LA [auth a]
IPR050637NLRP family, innate immunity and inflammation regulatorsFamily