9T05 | pdb_00009t05

X-ray structure of the adduct formed by dirhodium tetraacetate with a C-phycocyanin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth LLL]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
K [auth KKK]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
I [auth III]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
G [auth GGG]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth LLL]	Fusion_gly	e9t05LLL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
J [auth JJJ]	Fusion_gly	e9t05JJJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
H [auth HHH]	Fusion_gly	e9t05HHH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
F [auth FFF]	Fusion_gly	e9t05FFF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
D [auth DDD]	Fusion_gly	e9t05DDD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
B [auth BBB]	peroxidase	e9t05BBB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: peroxidase	ECOD (v295.2)
K [auth KKK]	Fusion_gly	e9t05KKK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
I [auth III]	Fusion_gly	e9t05III1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
G [auth GGG]	Fusion_gly	e9t05GGG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
E [auth EEE]	Fusion_gly	e9t05EEE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
C [auth CCC]	Fusion_gly	e9t05CCC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fusion_gly	ECOD (v295.2)
A [auth AAA]	peroxidase	e9t05AAA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: peroxidase	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	C-phycocyanin beta chain	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	C-phycocyanin alpha subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR006247	Phycocyanin, beta subunit	Family
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR012128	Phycobilisome, alpha/beta subunit	Family
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR006246	Phycocyanin, alpha subunit	Family
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	MEN	Parent Component: ASN : AA0070 : N4-methyl-L-asparagine MOD:00079

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.