Annotations: 9SW6

Structure of the Mvh-Hdr-Fmd complex of Methanothermobacter marburgensis (composite structure)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth l]	ClpB_D2-small	e9sw6l1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
I [auth L]	TPP1	e9sw6L1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)
H [auth J]	TPP1	e9sw6J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)
J [auth i]	TPP1	e9sw6i1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)
G [auth I]	ClpB_D2-small	e9sw6I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
N [auth h]	TPP1	e9sw6h1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)
F [auth H]	ClpB_D2-small	e9sw6H1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
B	TPP1	e9sw6B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)
P [auth G]	TPP1	e9sw6G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)
M [auth K]	TPP1	e9sw6K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TPP1	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth L], K [auth l]	Tungsten formylmethanofuran dehydrogenase, subunit G	oxidoreductase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
H [auth J], L [auth j]	formylmethanofuran dehydrogenase subunit B	oxidoreductase activity oxidoreductase activity, acting on NAD(P)H catalytic activity NADH dehydrogenase activity formylmethanofuran dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process methanogenesis, from carbon dioxide anaerobic respiration cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process methanogenesis, from carbon dioxide anaerobic respiration respiratory electron transport chain electron transport chain	cellular anatomical structure membrane
G [auth I], J [auth i]	Tungsten formylmethanofuran dehydrogenase, subunit A	oxidoreductase activity catalytic activity hydrolase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	-
F [auth H], N [auth h]	Tungsten formylmethanofuran dehydrogenase, subunit F	oxidoreductase activity catalytic activity	-	-
E	F420-non-reducing hydrogenase subunit G	oxidoreductase activity catalytic activity iron-sulfur cluster binding binding metal cluster binding small molecule binding	-	-
D	F420-non-reducing hydrogenase iron-sulfur subunit D	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
C	H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit C	oxidoreductase activity, acting on a sulfur group of donors CoB--CoM heterodisulfide reductase activity oxidoreductase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	cell periphery cellular anatomical structure plasma membrane membrane
B	H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit B	oxidoreductase activity, acting on a sulfur group of donors CoB--CoM heterodisulfide reductase activity oxidoreductase activity catalytic activity	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	cellular anatomical structure membrane
Q [auth F]	F420-non-reducing hydrogenase subunit A	cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor oxidoreductase activity, acting on hydrogen as donor ferredoxin hydrogenase activity catalytic activity	-	-
P [auth G]	Polyferredoxin protein MvhB	oxidoreductase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding	-	-
M [auth K], O [auth k]	Molybdenum-containing formylmethanofuran dehydrogenase 1 subunit C	cation binding transition metal ion binding molybdenum ion binding ion binding binding metal ion binding small molecule binding molybdopterin cofactor binding formylmethanofuran dehydrogenase activity oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process methanogenesis, from carbon dioxide anaerobic respiration	-
A	H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit A	oxidoreductase activity, acting on a sulfur group of donors CoB--CoM heterodisulfide reductase activity oxidoreductase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth L], K [auth l]	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
I [auth L], K [auth l]	IPR050157	Photosystem I iron-sulfur center	Family
I [auth L], K [auth l]	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
H [auth J], L [auth j]	IPR006656	Molybdopterin oxidoreductase	Domain
H [auth J], L [auth j]	IPR050123	Prok_molybdopt-oxidoreductase	Unknown
H [auth J], L [auth j]	IPR016457	Formylmethanofuran dehydrogenase, subunit B	Family
G [auth I], J [auth i]	IPR012027	Formylmethanofuran dehydrogenase, subunit A	Family
G [auth I], J [auth i]	IPR013108	Amidohydrolase 3	Domain
G [auth I], J [auth i]	IPR050378	Metallo-dependent Hydrolases Superfamily	Family
G [auth I], J [auth i]	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
G [auth I], J [auth i]	IPR053635	Metallo-dependent Hydrolases FwdA/FmdA	Family
G [auth I], J [auth i]	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
F [auth H], N [auth h]	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
F [auth H], N [auth h]	IPR052977	Polyferredoxin-like electron transfer protein	Family
F [auth H], N [auth h]	IPR043256	Polyferredoxin protein FwdF	Family
F [auth H], N [auth h]	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
E	IPR051349	Hydrogenase complex-associated protein	Family
E	IPR037024	[NiFe]-hydrogenase, small subunit, N-terminal domain superfamily	Homologous Superfamily
E	IPR006137	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	Domain
D	IPR003813	F420-non-reducing hydrogenase iron-sulfur subunit D	Domain
C	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
C	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
C	IPR017680	CoB--CoM heterodisulphide reductase, subunit C	Family
C	IPR009051	Alpha-helical ferredoxin	Homologous Superfamily
B	IPR004017	Cysteine-rich domain	Domain
B	IPR017678	CoB--CoM heterodisulphide reductase, subunit B	Family
B	IPR051278	CoM-S-S-CoB heterodisulfide reductase	Family
Q [auth F]	IPR001501	Nickel-dependent hydrogenase, large subunit	Family
Q [auth F]	IPR029014	[NiFe]-hydrogenase, large subunit	Homologous Superfamily
Q [auth F]	IPR018194	Nickel-dependent hydrogenase, large subunit, nickel binding site	Binding Site
P [auth G]	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
P [auth G]	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
P [auth G]	IPR001080	3Fe-4S ferredoxin	Family
P [auth G]	IPR050572	Fe-S_Ferredoxin	Unknown
M [auth K], O [auth k]	IPR041717	FwdD/FmdC, molybdopterin dinucleotide-binding domain	Domain
M [auth K], O [auth k]	IPR006657	Molybdopterin dinucleotide-binding domain	Domain
M [auth K], O [auth k]	IPR036485	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Homologous Superfamily
M [auth K], O [auth k]	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
M [auth K], O [auth k]	IPR012048	Formylmethanofuran dehydrogenase, fused subunit C/D	Family
M [auth K], O [auth k]	IPR017550	Formylmethanofuran dehydrogenase subunit C	Domain
A	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
A	IPR040131	MnmG, N-terminal domain	Domain
A	IPR039650	H(2):CoB-CoM heterodisulfide,ferredoxin reductase subunit A-like	Family
A	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
A	IPR023753	FAD/NAD(P)-binding domain	Domain
A	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9SW6 | pdb_00009sw6

Structure of the Mvh-Hdr-Fmd complex of Methanothermobacter marburgensis (composite structure)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage