9SV3 | pdb_00009sv3

Local refinement of EloB/EloC/VHL/CV2a/14-3-3zeta/ERa from pose 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth E]SCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
F [auth D]SCOP2B Superfamily14-3-3 protein 8034961 3001329 SCOP2B (2022-06-29)
E [auth I]SCOP2B Superfamily14-3-3 protein 8034961 3001329 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth E]PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1]. Domain
G [auth E]PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. Domain
E [auth I],
F [auth D]
PF0024414-3-3 protein (14-3-3)14-3-3 protein- Repeat
B [auth C]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth G],
D [auth H]
Estrogen receptor
G [auth E]von Hippel-Lindau disease tumor suppressor
E [auth I],
F [auth D]
14-3-3 protein zeta/delta
B [auth C]Elongin-B
A [auth B]Elongin-C

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth G],
D [auth H]
IPR001628Zinc finger, nuclear hormone receptor-typeDomain
C [auth G],
D [auth H]
IPR050200Nuclear hormone receptor family NR3 subfamilyFamily
C [auth G],
D [auth H]
IPR013088Zinc finger, NHR/GATA-typeHomologous Superfamily
C [auth G],
D [auth H]
IPR024736Oestrogen-type nuclear receptor final C-terminal domainDomain
C [auth G],
D [auth H]
IPR001292Estrogen receptorFamily
C [auth G],
D [auth H]
IPR024178Estrogen receptor/oestrogen-related receptorFamily
C [auth G],
D [auth H]
IPR001723Nuclear hormone receptorFamily
C [auth G],
D [auth H]
IPR046944Estrogen receptor, N-terminalDomain
C [auth G],
D [auth H]
IPR000536Nuclear hormone receptor, ligand-binding domainDomain
C [auth G],
D [auth H]
IPR035500Nuclear hormone receptor-like domain superfamilyHomologous Superfamily
G [auth E]IPR037139von Hippel-Lindau disease tumour suppressor, alpha domain superfamilyHomologous Superfamily
G [auth E]IPR022772von Hippel-Lindau disease tumour suppressor, beta/alpha domainDomain
G [auth E]IPR024053von Hippel-Lindau disease tumour suppressor, beta domainDomain
G [auth E]IPR024048von Hippel-Lindau disease tumour suppressor, alpha domainDomain
G [auth E]IPR036208VHL superfamilyHomologous Superfamily
G [auth E]IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyHomologous Superfamily
E [auth I],
F [auth D]
IPR02340914-3-3 protein, conserved siteConserved Site
E [auth I],
F [auth D]
IPR02341014-3-3 domainDomain
E [auth I],
F [auth D]
IPR03681514-3-3 domain superfamilyHomologous Superfamily
E [auth I],
F [auth D]
IPR00030814-3-3 proteinFamily
B [auth C]IPR000626Ubiquitin-like domainDomain
B [auth C]IPR039049Elongin BFamily
B [auth C]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
A [auth B]IPR016073SKP1 component, POZ domainDomain
A [auth B]IPR001232S-phase kinase-associated protein 1-likeFamily
A [auth B]IPR039948Elongin-CFamily
A [auth B]IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth G],
D [auth H]
PharosP03372
G [auth E]PharosP40337
E [auth I],
F [auth D]
PharosP63104
B [auth C]PharosQ15370
A [auth B]PharosQ15369

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth G],
D [auth H]
TPO Parent Component: THR

RESIDAA0038

PSI-MOD :  O-phospho-L-threonine MOD:00047