9SS6 | pdb_00009ss6

70S ribosome from RimM-KO


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]Small ribosomal subunit protein uS2
B [auth AB]Small ribosomal subunit protein uS3
C [auth AC]Small ribosomal subunit protein uS4
D [auth AD]Small ribosomal subunit protein uS5
E [auth AE]Small ribosomal subunit protein bS6, fully modified isoform
F [auth AF]Small ribosomal subunit protein uS7
G [auth AG]Small ribosomal subunit protein uS8
H [auth AH]Small ribosomal subunit protein uS9
I [auth AI]Small ribosomal subunit protein uS10
J [auth AJ]Small ribosomal subunit protein uS11
K [auth AK]Small ribosomal subunit protein uS12
L [auth AL]Small ribosomal subunit protein uS13
M [auth AM]Small ribosomal subunit protein uS14
N [auth AN]Small ribosomal subunit protein uS15
O [auth AO]Small ribosomal subunit protein bS16
P [auth AP]Small ribosomal subunit protein uS17
Q [auth AQ]Small ribosomal subunit protein bS18
R [auth AR]Small ribosomal subunit protein uS19
KA [auth BG],
S [auth AS]
Small ribosomal subunit protein bS20
T [auth AT]Small ribosomal subunit protein bS21
U [auth B0]Large ribosomal subunit protein bL27
V [auth B1]Large ribosomal subunit protein bL28
W [auth B2]Large ribosomal subunit protein uL29
X [auth B3]Large ribosomal subunit protein uL30
Y [auth B4]Large ribosomal subunit protein bL31A
Z [auth B5]Large ribosomal subunit protein bL32
AA [auth B6]Large ribosomal subunit protein bL33
BA [auth B7]Large ribosomal subunit protein bL34
CA [auth B8]Large ribosomal subunit protein bL35
DA [auth B9]Large ribosomal subunit protein bL36A
EA [auth BA]Large ribosomal subunit protein uL1
FA [auth BB]Large ribosomal subunit protein uL2
GA [auth BC]50S ribosomal protein L3
HA [auth BD]Large ribosomal subunit protein uL4
IA [auth BE]Large ribosomal subunit protein uL5
JA [auth BF]Large ribosomal subunit protein uL6
LA [auth BI]Large ribosomal subunit protein bL9
MA [auth BK]50S ribosomal protein L11
NA [auth BM]Large ribosomal subunit protein uL13
OA [auth BN]Large ribosomal subunit protein uL14
PA [auth BO]Large ribosomal subunit protein uL15
QA [auth BP]50S ribosomal protein L16
RA [auth BQ]Large ribosomal subunit protein bL17
SA [auth BR]Large ribosomal subunit protein uL18
TA [auth BS]Large ribosomal subunit protein bL19
UA [auth BT]Large ribosomal subunit protein bL20
VA [auth BU]Large ribosomal subunit protein bL21
WA [auth BV]Large ribosomal subunit protein uL22
XA [auth BW]Large ribosomal subunit protein uL23
YA [auth BX]Large ribosomal subunit protein uL24
ZA [auth BY]Large ribosomal subunit protein bL25
AB [auth D1]16S Ribosomal RNA---
BB [auth D2]23S Ribosomal RNA---
CB [auth D3]5S Ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth AA]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
A [auth AA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth AA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth AA]IPR001865Small ribosomal subunit protein uS2Family
B [auth AB]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
B [auth AB]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth AB]IPR057258Small ribosomal subunit protein uS3Family
B [auth AB]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth AB]IPR004087K Homology domainDomain
B [auth AB]IPR004044K Homology domain, type 2Domain
B [auth AB]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth AB]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth AB]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
C [auth AC]IPR002942RNA-binding S4 domainDomain
C [auth AC]IPR022801Small ribosomal subunit protein uS4Family
C [auth AC]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
C [auth AC]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
C [auth AC]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
C [auth AC]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
D [auth AD]IPR000851Small ribosomal subunit protein uS5Family
D [auth AD]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth AD]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
D [auth AD]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth AD]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth AD]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth AD]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth AE]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
E [auth AE]IPR000529Small ribosomal subunit protein bS6Family
E [auth AE]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
E [auth AE]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
E [auth AE]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
F [auth AF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth AF]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
F [auth AF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth AF]IPR000235Small ribosomal subunit protein uS7Family
F [auth AF]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth AG]IPR000630Small ribosomal subunit protein uS8Family
G [auth AG]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth AG]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
H [auth AH]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
H [auth AH]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
H [auth AH]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth AH]IPR000754Small ribosomal subunit protein uS9Family
H [auth AH]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
I [auth AI]IPR027486Small ribosomal subunit protein uS10 domainDomain
I [auth AI]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
I [auth AI]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
I [auth AI]IPR001848Small ribosomal subunit protein uS10Family
J [auth AJ]IPR001971Small ribosomal subunit protein uS11Family
J [auth AJ]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth AJ]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
J [auth AJ]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
K [auth AK]IPR005679Ribosomal protein uS12, bacteriaFamily
K [auth AK]IPR006032Small ribosomal subunit protein uS12Family
K [auth AK]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth AL]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
L [auth AL]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
L [auth AL]IPR001892Small ribosomal subunit protein uS13Family
L [auth AL]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
L [auth AL]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
M [auth AM]IPR001209Small ribosomal subunit protein uS14Family
M [auth AM]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
M [auth AM]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
N [auth AN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth AN]IPR000589Small ribosomal subunit protein uS15Family
N [auth AN]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
O [auth AO]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
O [auth AO]IPR000307Small ribosomal subunit protein bS16Family
O [auth AO]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
P [auth AP]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
P [auth AP]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
P [auth AP]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth AP]IPR000266Small ribosomal subunit protein uS17Family
Q [auth AQ]IPR001648Small ribosomal subunit protein bS18Family
Q [auth AQ]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
Q [auth AQ]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
R [auth AR]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
R [auth AR]IPR002222Small ribosomal subunit protein uS19Family
R [auth AR]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth AR]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
KA [auth BG],
S [auth AS]
IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
KA [auth BG],
S [auth AS]
IPR002583Small ribosomal subunit protein bS20Family
T [auth AT]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
T [auth AT]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
T [auth AT]IPR001911Small ribosomal subunit protein bS21Family
U [auth B0]IPR001684Large ribosomal subunit protein bL27Family
U [auth B0]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
V [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
V [auth B1]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
V [auth B1]IPR026569Large ribosomal subunit protein bL28Family
V [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
W [auth B2]IPR050063Universal ribosomal protein uL29Family
W [auth B2]IPR001854Large ribosomal subunit protein uL29Family
W [auth B2]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
W [auth B2]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
X [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
X [auth B3]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
X [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
X [auth B3]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Y [auth B4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
Y [auth B4]IPR027491Large ribosomal subunit protein bL31 type AFamily
Y [auth B4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Y [auth B4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
Z [auth B5]IPR002677Large ribosomal subunit protein bL32Family
Z [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth B5]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
AA [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AA [auth B6]IPR001705Large ribosomal subunit protein bL33Family
AA [auth B6]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
BA [auth B7]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BA [auth B7]IPR000271Large ribosomal subunit protein bL34Family
CA [auth B8]IPR021137Large ribosomal subunit protein bL35-likeFamily
CA [auth B8]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CA [auth B8]IPR001706Large ribosomal subunit protein bL35Family
CA [auth B8]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
DA [auth B9]IPR000473Large ribosomal subunit protein bL36Family
DA [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
EA [auth BA]IPR005878Large ribosomal subunit protein uL1, bacteriaFamily
EA [auth BA]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
EA [auth BA]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
EA [auth BA]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
EA [auth BA]IPR002143Large ribosomal subunit protein uL1Family
EA [auth BA]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
FA [auth BB]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
FA [auth BB]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
FA [auth BB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth BB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth BB]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
FA [auth BB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth BB]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
FA [auth BB]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
FA [auth BB]IPR002171Large ribosomal subunit protein uL2Family
GA [auth BC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
GA [auth BC]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
GA [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth BC]IPR000597Large ribosomal subunit protein uL3Family
HA [auth BD]IPR013005Large ribosomal subunit protein uL4-likeFamily
HA [auth BD]IPR002136Large ribosomal subunit protein uL4Family
HA [auth BD]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IA [auth BE]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IA [auth BE]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IA [auth BE]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IA [auth BE]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IA [auth BE]IPR002132Large ribosomal subunit protein uL5Family
IA [auth BE]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
JA [auth BF]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
JA [auth BF]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
JA [auth BF]IPR000702Large ribosomal subunit protein uL6-likeFamily
JA [auth BF]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
JA [auth BF]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
LA [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
LA [auth BI]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
LA [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
LA [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
LA [auth BI]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
LA [auth BI]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
LA [auth BI]IPR000244Large ribosomal subunit protein bL9Family
MA [auth BK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
MA [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
MA [auth BK]IPR000911Ribosomal protein uL11Family
MA [auth BK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
MA [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
MA [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
MA [auth BK]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
NA [auth BM]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
NA [auth BM]IPR005822Large ribosomal subunit protein uL13Family
NA [auth BM]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
NA [auth BM]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
OA [auth BN]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
OA [auth BN]IPR000218Large ribosomal subunit protein uL14Family
OA [auth BN]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
OA [auth BN]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
PA [auth BO]IPR021131Large ribosomal subunit protein uL15/eL18Domain
PA [auth BO]IPR030878Large ribosomal subunit protein uL15Family
PA [auth BO]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
PA [auth BO]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
PA [auth BO]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
QA [auth BP]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
QA [auth BP]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
QA [auth BP]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
QA [auth BP]IPR016180Large ribosomal subunit protein uL16 domainDomain
QA [auth BP]IPR047873Large ribosomal subunit protein uL16Family
RA [auth BQ]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
RA [auth BQ]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
RA [auth BQ]IPR000456Large ribosomal subunit protein bL17Family
SA [auth BR]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
SA [auth BR]IPR057268Large ribosomal subunit protein uL18Family
SA [auth BR]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
TA [auth BS]IPR001857Large ribosomal subunit protein bL19Family
TA [auth BS]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
TA [auth BS]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
TA [auth BS]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
UA [auth BT]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
UA [auth BT]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
UA [auth BT]IPR005813Large ribosomal subunit protein bL20Family
VA [auth BU]IPR028909Large ribosomal subunit protein bL21-likeFamily
VA [auth BU]IPR001787Large ribosomal subunit protein bL21Family
VA [auth BU]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
VA [auth BU]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
WA [auth BV]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
WA [auth BV]IPR001063Large ribosomal subunit protein uL22Family
WA [auth BV]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
WA [auth BV]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
WA [auth BV]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
XA [auth BW]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
XA [auth BW]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
XA [auth BW]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
XA [auth BW]IPR013025Large ribosomal subunit protein uL23-likeFamily
YA [auth BX]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
YA [auth BX]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
YA [auth BX]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
YA [auth BX]IPR003256Large ribosomal subunit protein uL24Family
YA [auth BX]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
YA [auth BX]IPR005824KOWDomain
YA [auth BX]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
ZA [auth BY]IPR020055Ribosomal protein bL25, short-formFamily
ZA [auth BY]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
ZA [auth BY]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
ZA [auth BY]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
ZA [auth BY]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily