Annotations: 9SRW

Cryo-EM structure of the Mlc tetramer in complex with the anti-repressor MtfA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth C]	SCOP2B Superfamily	Actin-like ATPases	8092406	3000092	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Winged helix DNA-binding domain	8017627	3000034	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Actin-like ATPases	8017630	3000092	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Actin-like ATPases	8017630	3000092	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Winged helix DNA-binding domain	8017627	3000034	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Actin-like ATPases	8092406	3000092	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Winged helix DNA-binding domain	8017627	3000034	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Actin-like ATPases	8092406	3000092	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Actin-like ATPases	8017630	3000092	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Actin-like ATPases	8017630	3000092	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Actin-like ATPases	8092406	3000092	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Winged helix DNA-binding domain	8017627	3000034	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], C [auth B], E [auth C], F [auth D]	PF00480	ROK family (ROK)	ROK family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A], C [auth B], E [auth C], F [auth D]	DNA-binding transcriptional repressor Mlc	DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding identical protein binding protein binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm
A [auth E], D [auth F]	Mlc titration factor A	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding aminopeptidase activity exopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], C [auth B], E [auth C], F [auth D]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B [auth A], C [auth B], E [auth C], F [auth D]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B [auth A], C [auth B], E [auth C], F [auth D]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B [auth A], C [auth B], E [auth C], F [auth D]	IPR000600	ROK family	Family
A [auth E], D [auth F]	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
A [auth E], D [auth F]	IPR010384	MtfA family	Family
A [auth E], D [auth F]	IPR057256	MtfA, enterobacterales	Family
A [auth E], D [auth F]	IPR042252	MtfA, N-terminal	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9SRW | pdb_00009srw

Cryo-EM structure of the Mlc tetramer in complex with the anti-repressor MtfA

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage