9SOB | pdb_00009sob

Structural Model of the Nuclear Pore Complex in Arabidopsis thaliana


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
V [auth L],
W [auth L8],
X [auth L16]
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
M [auth P],
P [auth P8],
S [auth P16]
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat
J [auth T],
K [auth T8],
L [auth T16]
PF13934Nuclear pore complex assembly (ELYS)Nuclear pore complex assembly- Repeat
C [auth N],
F [auth N8],
I [auth N16]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Repeat
PF08801Nup133 N terminal like (Nucleoporin_N)Nup133 N terminal like- Repeat
AB [auth J32],
DB [auth J8],
GB [auth J24],
JB [auth J16]
PF05064Nsp1-like C-terminal region (Nsp1_C)Nsp1-like C-terminal region- Family
BB [auth H8],
EB [auth H24],
HB [auth H16],
YA [auth H]
PF13874Nucleoporin complex subunit 54 (Nup54)Nucleoporin complex subunit 54- Coiled-coil
B [auth M],
E [auth M8],
H [auth M16]
PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
UA [auth 4],
WA [auth 48]
PF25460Aladin seven-bladed propeller (Beta-prop_Aladin)Aladin seven-bladed propeller- Repeat
IA [auth J]PF05064Nsp1-like C-terminal region (Nsp1_C)Nsp1-like C-terminal region- Family
HA [auth W]PF10168Nuclear pore component (Nup88)Nuclear pore component- Repeat
FA [auth A],
RB [auth A48]
PF04097Nup93/Nic96 (Nic96)Nup93/Nic96- Repeat
CA [auth A24],
EA [auth A40],
MA [auth A16],
PA [auth A32]
PF04097Nup93/Nic96 (Nic96)Nup93/Nic96- Repeat
BA [auth C16],
DA [auth C24],
JA [auth C],
KA [auth C8],
QB [auth C32]
PF11894Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)Nuclear pore complex scaffold, nucleoporins 186/192/205- Repeat
A [auth R],
D [auth R8],
G [auth R16]
PF23347Nup160 C-terminal TPR (TPR_Nup160_C)Nup160 C-terminal TPR- Repeat
A [auth R],
D [auth R8],
G [auth R16]
PF23354NUP160/120 middle TPR (TPR_NUP160_120_M)NUP160/120 middle TPR- Repeat
A [auth R],
D [auth R8],
G [auth R16]
PF17238NUP160, helical domain (NUP160_helical_2)NUP160, helical domainThis entry represents a helical domain that can be found in NUP160, also known as SAR1, a nucleoporin protein in Arabidopsis thaliana. It is a member of the NUP107-160 nuclear pore sub-complex [1]. NUP160 plays a role in normal auxin signalling, whic ...This entry represents a helical domain that can be found in NUP160, also known as SAR1, a nucleoporin protein in Arabidopsis thaliana. It is a member of the NUP107-160 nuclear pore sub-complex [1]. NUP160 plays a role in normal auxin signalling, which works in synergy with ethylene to control various ethylene-dependent phenomena [2]. Also, it contributes to pathogen defense [3], nucleocytoplasmic mRNA export [2], and is required for disease resistance [4].
Domain
A [auth R],
D [auth R8],
G [auth R16]
PF11715Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160)Nucleoporin Nup120/160, beta-propeller domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AA [auth K16],
Y [auth K],
Z [auth K8]
Nuclear pore complex protein NUP133
V [auth L],
W [auth L8],
X [auth L16]
Nuclear pore complex protein NUP107
O [auth Q],
R [auth Q8],
U [auth Q16]
Nuclear pore complex protein NUP43-
N [auth O],
Q [auth O8],
T [auth O16]
Protein SEH1
M [auth P],
P [auth P8],
S [auth P16]
Nuclear pore complex protein NUP85
J [auth T],
K [auth T8],
L [auth T16]
E3 ubiquitin-protein ligase HOS1
C [auth N],
F [auth N8],
I [auth N16]
Protein transport protein SEC13 homolog B
Nuclear pore complex protein NUP155
AB [auth J32],
DB [auth J8],
GB [auth J24],
JB [auth J16]
Nuclear pore complex protein NUP62
CB [auth I8],
FB [auth I24],
IB [auth I16],
ZA [auth I]
NUP58
BB [auth H8],
EB [auth H24],
HB [auth H16],
YA [auth H]
Nuclear pore complex protein NUP54
VA [auth E],
XA [auth E8]
Nucleoporin protein Ndc1-Nup protein
B [auth M],
E [auth M8],
H [auth M16]
Nuclear pore complex protein NUP96
UA [auth 4],
WA [auth 48]
Aladin-
SA [auth B],
TA [auth B8]
Nucleoporin (DUF3414)
NA [auth F8],
OA [auth F],
QA [auth F24],
RA [auth F16]
Nuclear pore complex protein NUP35
LA [auth A8]Nuclear pore complex protein NUP93A
IA [auth J]Nuclear pore complex protein NUP62
HA [auth W]Nuclear pore complex protein NUP88
GA [auth V]Nuclear pore complex protein NUP214
FA [auth A],
RB [auth A48]
Nuclear pore complex protein NUP93A
CA [auth A24],
EA [auth A40],
MA [auth A16],
PA [auth A32]
Nuclear pore complex protein NUP93A
BA [auth C16],
DA [auth C24],
JA [auth C],
KA [auth C8],
QB [auth C32]
Nuclear pore complex protein NUP205-
A [auth R],
D [auth R8],
G [auth R16]
Nuclear pore complex protein NUP160

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
AA [auth K16],
Y [auth K],
Z [auth K8]
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
AA [auth K16],
Y [auth K],
Z [auth K8]
IPR037624Nuclear pore complex protein Nup133-likeFamily
AA [auth K16],
Y [auth K],
Z [auth K8]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth K16],
Y [auth K],
Z [auth K8]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
V [auth L],
W [auth L8],
X [auth L16]
IPR007252Nuclear pore protein 84/107Family
O [auth Q],
R [auth Q8],
U [auth Q16]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
N [auth O],
Q [auth O8],
T [auth O16]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
N [auth O],
Q [auth O8],
T [auth O16]
IPR037363Sec13/Seh1 familyFamily
N [auth O],
Q [auth O8],
T [auth O16]
IPR001680WD40 repeatRepeat
N [auth O],
Q [auth O8],
T [auth O16]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
M [auth P],
P [auth P8],
S [auth P16]
IPR011502Nucleoporin Nup85-likeFamily
J [auth T],
K [auth T8],
L [auth T16]
IPR044718E3 ubiquitin-protein ligase HOS1Family
J [auth T],
K [auth T8],
L [auth T16]
IPR025151ELYS-like domainDomain
J [auth T],
K [auth T8],
L [auth T16]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
C [auth N],
F [auth N8],
I [auth N16]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth N],
F [auth N8],
I [auth N16]
IPR037363Sec13/Seh1 familyFamily
C [auth N],
F [auth N8],
I [auth N16]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C [auth N],
F [auth N8],
I [auth N16]
IPR001680WD40 repeatRepeat
C [auth N],
F [auth N8],
I [auth N16]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
IPR042538Nucleoporin, Nup155-like, C-terminal, subdomain 3Homologous Superfamily
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
IPR004870Nucleoporin, Nup155-likeFamily
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
AB [auth J32],
DB [auth J8],
GB [auth J24],
JB [auth J16]
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
AB [auth J32],
DB [auth J8],
GB [auth J24],
JB [auth J16]
IPR026010Nucleoporin NSP1/NUP62Family
CB [auth I8],
FB [auth I24],
IB [auth I16],
ZA [auth I]
IPR024882Nucleoporin p58/p45/NUP49Family
BB [auth H8],
EB [auth H24],
HB [auth H16],
YA [auth H]
IPR025712Nucleoporin Nup54, alpha-helical domainDomain
BB [auth H8],
EB [auth H24],
HB [auth H16],
YA [auth H]
IPR024864Nucleoporin Nup54/Nup57/Nup44Family
VA [auth E],
XA [auth E8]
IPR019049Nucleoporin protein Ndc1-NupFamily
B [auth M],
E [auth M8],
H [auth M16]
IPR037665Nucleoporin peptidase S59-likeFamily
B [auth M],
E [auth M8],
H [auth M16]
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
B [auth M],
E [auth M8],
H [auth M16]
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
B [auth M],
E [auth M8],
H [auth M16]
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
UA [auth 4],
WA [auth 48]
IPR045139AladinFamily
UA [auth 4],
WA [auth 48]
IPR001680WD40 repeatRepeat
UA [auth 4],
WA [auth 48]
IPR057403Aladin, seven-bladed propellerDomain
UA [auth 4],
WA [auth 48]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
SA [auth B],
TA [auth B8]
IPR044840Nucleoporin Nup188Family
NA [auth F8],
OA [auth F],
QA [auth F24],
RA [auth F16]
IPR017389Nucleoporin, NUP53Family
NA [auth F8],
OA [auth F],
QA [auth F24],
RA [auth F16]
IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
NA [auth F8],
OA [auth F],
QA [auth F24],
RA [auth F16]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
NA [auth F8],
OA [auth F],
QA [auth F24],
RA [auth F16]
IPR035979RNA-binding domain superfamilyHomologous Superfamily
LA [auth A8]IPR007231Nucleoporin interacting component Nup93/Nic96Family
IA [auth J]IPR007758Nucleoporin, NSP1-like, C-terminalDomain
IA [auth J]IPR026010Nucleoporin NSP1/NUP62Family
HA [auth W]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth W]IPR037700Nucleoporin NUP88/NUP82Family
HA [auth W]IPR019321Nucleoporin Nup88Family
GA [auth V]IPR044694Nuclear pore complex protein NUP214Family
FA [auth A],
RB [auth A48]
IPR007231Nucleoporin interacting component Nup93/Nic96Family
CA [auth A24],
EA [auth A40],
MA [auth A16],
PA [auth A32]
IPR007231Nucleoporin interacting component Nup93/Nic96Family
BA [auth C16],
DA [auth C24],
JA [auth C],
KA [auth C8],
QB [auth C32]
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
A [auth R],
D [auth R8],
G [auth R16]
IPR035192NUP160, helical domain, plantsDomain
A [auth R],
D [auth R8],
G [auth R16]
IPR021717Nucleoporin Nup120/160Family
A [auth R],
D [auth R8],
G [auth R16]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth R],
D [auth R8],
G [auth R16]
IPR056535NUP160, middle TPR domainDomain
A [auth R],
D [auth R8],
G [auth R16]
IPR059141Nucleoporin Nup120/160, beta-propeller domainDomain
A [auth R],
D [auth R8],
G [auth R16]
IPR056536NUP160, C-terminal TPR domainDomain