9SJ5 | pdb_00009sj5

Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class1)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth M]SCOP2B SuperfamilyInhibitor of apoptosis (IAP) repeat 8035906 3001510 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyCPC core-like 8053504 3002197 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyCore histone-like 8067130 3001387 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyCore histone-like 8067130 3001387 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyCPC core-like 8053505 3002197 SCOP2B (2022-06-29)
A [auth E]SCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
L [auth M]PF00653Inhibitor of Apoptosis domain (BIR)Inhibitor of Apoptosis domainBIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, incl ...BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin (Swiss:O15392) [2].
Domain
K [auth L],
N [auth O]
PF10444Nbl1 / Borealin N terminal (Nbl1_Borealin_N)Nbl1 / Borealin N terminal- Family
F [auth C],
I [auth G]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
E [auth B],
H [auth F]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
M [auth N]PF12178Chromosome passenger complex (CPC) protein INCENP N terminal (INCENP_N)Chromosome passenger complex (CPC) protein INCENP N terminalThis domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in ...This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N terminal domain is the domain involved in formation of this three helical bundle.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth M]Baculoviral IAP repeat-containing protein 5
K [auth L],
N [auth O]
Borealin-
G [auth D],
J [auth H]
Histone H2B type 1-J
F [auth C],
I [auth G]
Histone H2A type 1
E [auth B],
H [auth F]
Histone H4
D [auth A]Histone H3.2 -
C [auth J]DNA (147-MER)---
B [auth I]DNA (147-MER)---
M [auth N]Inner centromere protein
A [auth E]Histone H3.2 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth M]IPR001370BIR repeatRepeat
L [auth M]IPR051190Baculoviral IAP repeat-containingFamily
K [auth L],
N [auth O]
IPR046466Borealin, C-terminalDomain
K [auth L],
N [auth O]
IPR018851Borealin, N-terminalDomain
K [auth L],
N [auth O]
IPR018867Cell division protein borealinFamily
G [auth D],
J [auth H]
IPR009072Histone-foldHomologous Superfamily
G [auth D],
J [auth H]
IPR000558Histone H2BFamily
G [auth D],
J [auth H]
IPR007125Core Histone H2A/H2B/H3 domainDomain
G [auth D],
J [auth H]
IPR055333Histone H2B, conserved siteConserved Site
F [auth C],
I [auth G]
IPR009072Histone-foldHomologous Superfamily
F [auth C],
I [auth G]
IPR002119Histone H2AFamily
F [auth C],
I [auth G]
IPR007125Core Histone H2A/H2B/H3 domainDomain
F [auth C],
I [auth G]
IPR032454Histone H2A, C-terminal domainDomain
F [auth C],
I [auth G]
IPR032458Histone H2A conserved siteConserved Site
E [auth B],
H [auth F]
IPR009072Histone-foldHomologous Superfamily
E [auth B],
H [auth F]
IPR001951Histone H4Family
E [auth B],
H [auth F]
IPR035425CENP-T/Histone H4, histone foldDomain
E [auth B],
H [auth F]
IPR019809Histone H4, conserved siteConserved Site
E [auth B],
H [auth F]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
D [auth A]IPR009072Histone-foldHomologous Superfamily
D [auth A]IPR000164Histone H3/CENP-AFamily
D [auth A]IPR007125Core Histone H2A/H2B/H3 domainDomain
M [auth N]IPR005635Inner centromere protein, ARK-binding domainDomain
M [auth N]IPR022006Chromosome passenger complex (CPC) protein INCENP N-terminalDomain
A [auth E]IPR009072Histone-foldHomologous Superfamily
A [auth E]IPR000164Histone H3/CENP-AFamily
A [auth E]IPR007125Core Histone H2A/H2B/H3 domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
L [auth M]PharosO15392
K [auth L],
N [auth O]
PharosQ53HL2
G [auth D],
J [auth H]
PharosP06899
F [auth C],
I [auth G]
PharosP0C0S8
M [auth N]PharosQ9NQS7

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth E]TPO Parent Component: THR

RESIDAA0038

PSI-MOD :  O-phospho-L-threonine MOD:00047