9SEA | pdb_00009sea

Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16165	Ferlin C-terminus (Ferlin_C)	Ferlin C-terminus	-	Family
A	PF22901	Ferlin dsRNA-binding domain-like domain (dsrm_Ferlin)	Ferlin dsRNA-binding domain-like domain	This entry represents a domain which structurally resembles double stranded RNA binding domains found in ferlin proteins [1].	Domain
A	PF08150	FerB (NUC096) domain (FerB)	FerB (NUC096) domain	This is central domain B in proteins of the Ferlin family [1].	Domain
A	PF08151	FerI (NUC094) domain (FerI)	FerI (NUC094) domain	This domain is present in proteins of the Ferlin family. It is often located between two C2 domains [1].	Domain
A	PF00168	C2 domain (C2)	C2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Otoferlin	cation binding ion binding binding metal ion binding small molecule binding	multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus	membrane-bounded organelle Golgi membrane intracellular anatomical structure Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane cell periphery membrane-bounded organelle Golgi membrane intracellular anatomical structure Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane cell periphery presynapse synapse cell junction plasma membrane presynaptic membrane plasma membrane region synaptic membrane basal part of cell basal plasma membrane basolateral plasma membrane intracellular vesicle transport vesicle membrane cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane vesicle transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle cell projection organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037723	Ferlin, fourth C2 domain	Domain
A	IPR012561	Ferlin B-domain	Domain
A	IPR037721	Ferlin family	Family
A	IPR037724	Ferlin, fifth C2 domain	Domain
A	IPR037725	Ferlin, sixth C2 domain	Domain
A	IPR037722	Ferlin, third C2 domain	Domain
A	IPR032362	Ferlin, C-terminal domain	Domain
A	IPR012968	FerIin domain	Domain
A	IPR000008	C2 domain	Domain
A	IPR035892	C2 domain superfamily	Homologous Superfamily
A	IPR037726	Ferlin, first C2 domain	Domain
A	IPR055072	Ferlin, dsRNA-binding domain-like domain	Domain
A	IPR037720	Ferlin, second C2 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.