9SCW | pdb_00009scw

Crystal structure of Coxsackie B1 virus-like particle delta-palxa


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Y [auth M]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
XA [auth w]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
UA [auth s]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
U [auth I]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
RA [auth o]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
Q [auth g]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
PB [auth AO]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
MB [auth AK]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
M [auth Y]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
KA [auth c]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
JB [auth AG]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
I [auth E]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
GB [auth AC]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
GA [auth U]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
DB [auth 8]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
CA [auth Q]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
AB [auth 0]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8098312 3000918 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1
Capsid protein VP2
Capsid protein VP3
Capsid protein VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR059138Picornavirus capsid VP1Domain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain