Annotations: 9S5T

Cryo-EM structure of yeast EMC:Spf1 insertase:dislocase complex in digitonin

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I	PF23143	P5A-ATPase, transmembrane helical hairpin (2TM_P5A-ATPase)	P5A-ATPase, transmembrane helical hairpin	This domain is found in the homologues of endoplasmic reticulum P5A-ATPase (Spf1 in yeast; ATP13A1 in humans). The P5A-ATPase acts as a dislocase that mediates the ATP-dependent extraction of mislocalized mitochondrial transmembrane proteins from the ...	This domain is found in the homologues of endoplasmic reticulum P5A-ATPase (Spf1 in yeast; ATP13A1 in humans). The P5A-ATPase acts as a dislocase that mediates the ATP-dependent extraction of mislocalized mitochondrial transmembrane proteins from the endoplasmic reticulum membrane [1]. It interacts directly with the TM of the mitochondrial tail-anchored proteins. The domain represented by this entry consists of two transmembrane helices that form a helical hairpin. This domain seems to be loosely associated with the core transmembrane domain [1].	Domain
I	PF00122	P-type ATPase actuator domain (E1-E2_ATPase)	P-type ATPase actuator domain	This entry describes the actuator (A) domain found in P-type ATPases (also known as E1-E2 ATPases). The A domain serves as a built-in protein phosphatase that functions to dephosphorylate the phosphorylated P domain. The A domain is the smallest of t ...	This entry describes the actuator (A) domain found in P-type ATPases (also known as E1-E2 ATPases). The A domain serves as a built-in protein phosphatase that functions to dephosphorylate the phosphorylated P domain. The A domain is the smallest of the three cytoplasmic domains. It consists of a distorted jellyroll structure and two short helices [1-2].	Domain
I	PF13246	P-type ATPase, cytoplasmic domain N (Cation_ATPase)	P-type ATPase, cytoplasmic domain N	-	Family
H	PF21203	ER membrane protein complex subunit 10 (ECM10)	ER membrane protein complex subunit 10	EMC10 is a component of the endoplasmic reticulum (ER) membrane protein complex (EMC), a conserved co- and post-translational insertase which enables the energy-independent insertion into ER membranes of newly synthesized membrane proteins [1-4]. It ...	EMC10 is a component of the endoplasmic reticulum (ER) membrane protein complex (EMC), a conserved co- and post-translational insertase which enables the energy-independent insertion into ER membranes of newly synthesized membrane proteins [1-4]. It is involved in the co-translational insertion of multi-pass membrane proteins in which stop-transfer membrane-anchor sequences become ER membrane spanning helices. This complex controls the topology of multi-pass membrane proteins, such as G protein-coupled receptors [1,4]. This entry represents a conserved domain found in these proteins, which adopts a beta-sandwich fold.	Domain
G	PF17081	Suppressor of PMA 1-7 protein (SOP4)	Suppressor of PMA 1-7 protein	-	Family
F	PF07019	EMC6 (EMC6)	EMC6	-	Family
E	PF10270	Membrane magnesium transporter (MMgT)	Membrane magnesium transporter	-	Family
C	PF01956	Integral membrane protein EMC3/TMCO1-like (EMC3_TMCO1)	Integral membrane protein EMC3/TMCO1-like	-	Family
A	PF07774	ER membrane protein complex subunit 1, second beta-propeller (EMC1_C)	ER membrane protein complex subunit 1, second beta-propeller	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I	Endoplasmic reticulum transmembrane helix translocase	membrane protein dislocase activity protein carrier activity molecular carrier activity ATP-dependent activity monoatomic cation transmembrane transporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity transmembrane transporter activity binding membrane protein dislocase activity protein carrier activity molecular carrier activity ATP-dependent activity monoatomic cation transmembrane transporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity transmembrane transporter activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding P-type ion transporter activity P-type transmembrane transporter activity phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol-4-phosphate binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	inorganic ion homeostasis homeostatic process manganese ion homeostasis intracellular manganese ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular component organization cellular component biogenesis protein hexamerization inorganic ion homeostasis homeostatic process manganese ion homeostasis intracellular manganese ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular component organization cellular component biogenesis protein hexamerization cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis localization establishment of protein localization cellular localization establishment of protein localization to membrane extraction of mislocalized protein from ER membrane localization within membrane extraction of mislocalized protein from membrane establishment of localization intracellular calcium ion homeostasis calcium ion homeostasis transmembrane transport transport protein unfolding sterol homeostasis lipid homeostasis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle Golgi apparatus cis-Golgi network endomembrane system organelle subcompartment membrane endoplasmic reticulum subcompartment membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle Golgi apparatus cis-Golgi network endomembrane system organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
H	Endoplasmic reticulum membrane protein complex subunit 10	-	membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane protein insertion into ER membrane by stop-transfer membrane-anchor sequence localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane protein insertion into ER membrane by stop-transfer membrane-anchor sequence localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane
G	Protein SOP4	-	localization cellular localization transport establishment of localization in cell intracellular transport cellular process endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization Golgi vesicle transport vesicle-mediated transport	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane
F	ER membrane protein complex subunit 6	-	localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum phospholipid metabolic process organophosphate metabolic process phosphorus metabolic process lipid metabolic process membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane protein insertion into ER membrane by stop-transfer membrane-anchor sequence localization within membrane endoplasmic reticulum organization cellular component organization organelle organization protein localization to organelle intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization autophagosome assembly catabolic process organelle assembly vacuole organization macroautophagy autophagy autophagosome organization cellular component biogenesis cellular component assembly process utilizing autophagic mechanism	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane
E	ER membrane protein complex subunit 5	-	localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum phospholipid metabolic process organophosphate metabolic process phosphorus metabolic process lipid metabolic process membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane protein insertion into ER membrane by stop-transfer membrane-anchor sequence localization within membrane endoplasmic reticulum organization cellular component organization organelle organization protein localization to organelle intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane
D	ER membrane protein complex subunit 4	-	localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum phospholipid metabolic process organophosphate metabolic process phosphorus metabolic process lipid metabolic process membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane protein insertion into ER membrane by stop-transfer membrane-anchor sequence localization within membrane endoplasmic reticulum organization cellular component organization organelle organization protein localization to organelle intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane
C	ER membrane protein complex subunit 3	protein binding binding protein-folding chaperone binding	localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane tail-anchored membrane protein insertion into ER membrane localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane tail-anchored membrane protein insertion into ER membrane endoplasmic reticulum organization cellular component organization organelle organization protein localization to organelle cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum phospholipid metabolic process organophosphate metabolic process phosphorus metabolic process lipid metabolic process protein insertion into ER membrane by stop-transfer membrane-anchor sequence	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane
B	ER membrane protein complex subunit 2	-	localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane tail-anchored membrane protein insertion into ER membrane localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane tail-anchored membrane protein insertion into ER membrane endoplasmic reticulum organization cellular component organization organelle organization protein localization to organelle cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum phospholipid metabolic process organophosphate metabolic process phosphorus metabolic process lipid metabolic process protein insertion into ER membrane by stop-transfer membrane-anchor sequence	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane nucleus
A	ER membrane protein complex subunit 1	-	localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein folding in endoplasmic reticulum phospholipid metabolic process organophosphate metabolic process phosphorus metabolic process lipid metabolic process membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane protein insertion into ER membrane by stop-transfer membrane-anchor sequence localization within membrane endoplasmic reticulum organization cellular component organization organelle organization protein localization to organelle intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure EMC complex organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR001757	P-type ATPase	Family
I	IPR044492	P-type ATPase, haloacid dehalogenase domain	Domain
I	IPR057255	P5A-ATPase, transmembrane helical hairpin	Domain
I	IPR018303	P-type ATPase, phosphorylation site	PTM
I	IPR059000	P-type ATPase, A domain	Domain
I	IPR023298	P-type ATPase, transmembrane domain superfamily	Homologous Superfamily
I	IPR023214	HAD superfamily	Homologous Superfamily
I	IPR047820	P5A-type ATPase	Family
I	IPR008250	P-type ATPase, A domain superfamily	Homologous Superfamily
I	IPR006544	P-type ATPase, subfamily V	Family
I	IPR036412	HAD-like superfamily	Homologous Superfamily
I	IPR023299	P-type ATPase, cytoplasmic domain N	Homologous Superfamily
G	IPR031395	Protein Sop4	Family
F	IPR008504	ER membrane protein complex subunit 6	Family
F	IPR029008	ER membrane protein complex subunit 6-like	Family
E	IPR018937	Membrane magnesium transporter	Family
E	IPR053279	ER membrane protein complex subunit	Family
D	IPR009445	ER membrane protein complex subunit 4	Family
C	IPR008568	ER membrane protein complex subunit 3	Family
C	IPR002809	Integral membrane protein EMC3/TMCO1-like	Family
B	IPR039856	ER membrane protein complex subunit 2-like	Family
B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
B	IPR019734	Tetratricopeptide repeat	Repeat
A	IPR011678	ER membrane protein complex subunit 1, C-terminal	Domain
A	IPR026895	ER membrane protein complex subunit 1	Family

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9S5T | pdb_00009s5t

Cryo-EM structure of yeast EMC:Spf1 insertase:dislocase complex in digitonin

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage