Annotations: 9S28

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Gag-Pol polyprotein	catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exoribonuclease H activity exonuclease activity catalytic activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exoribonuclease H activity exonuclease activity catalytic activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein aspartic-type endopeptidase activity endopeptidase activity endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism RNA-DNA hybrid ribonuclease activity RNA endonuclease activity RNA-directed DNA polymerase activity RNA binding RNA stem-loop binding pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides dUTP diphosphatase activity hydrolase activity, acting on acid anhydrides cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral gene expression viral translational frameshifting viral translation viral genome integration into host DNA biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral gene expression viral translational frameshifting viral translation viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process nucleoside phosphate metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process nucleotide metabolic process phosphorus metabolic process DNA integration proteolysis protein metabolic process	viral capsid virion component
Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth g], W [auth h], X [auth i], Y [auth j], Z [auth k]	PC4 and SFRS1-interacting protein	DNA binding double-stranded DNA binding binding nucleic acid binding supercoiled DNA binding transcription factor binding protein binding DNA-binding transcription factor binding chromatin binding transcription coactivator activity transcription regulator activity transcription coregulator activity RNA binding	ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly nucleobase-containing compound metabolic process RNA biosynthetic process cellular component organization cellular component biogenesis nucleic acid biosynthetic process spliceosomal complex assembly protein-RNA complex organization cellular component assembly protein-containing complex assembly RNA processing ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly nucleobase-containing compound metabolic process RNA biosynthetic process cellular component organization cellular component biogenesis nucleic acid biosynthetic process spliceosomal complex assembly protein-RNA complex organization cellular component assembly protein-containing complex assembly RNA processing cellular component organization or biogenesis mRNA splice site recognition RNA splicing protein-containing complex organization primary metabolic process mRNA 5'-splice site recognition gene expression nucleobase-containing compound biosynthetic process mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA cis splicing, via spliceosome mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process response to oxidative stress response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus DNA-templated transcription regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process biological regulation regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process chromatin organization chromatin remodeling	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen euchromatin nucleoplasm
AA [auth T], BA [auth U]	DNA EV392	-	-	-
CA [auth W], EA [auth Y]	DNA EV306	-	-	-
DA [auth X], FA [auth Z]	DNA EV391	-	-	-

Chains

Polymer

Molecular Function

Biological Process

Cellular Component

A, B, C, D, E

Gag-Pol polyprotein

catalytic activity, acting on RNA

RNA exonuclease activity, producing 5'-phosphomonoesters

catalytic activity, acting on a nucleic acid

RNA exonuclease activity

RNA nuclease activity

hydrolase activity

hydrolase activity, acting on ester bonds

nuclease activity

exoribonuclease H activity

exonuclease activity

catalytic activity

catalytic activity, acting on DNA

DNA-directed DNA polymerase activity

DNA polymerase activity

biological process involved in interspecies interaction between organisms

symbiont entry into host cell

viral process

symbiont entry into host

viral life cycle

biological process involved in interaction with host

biological process involved in symbiotic interaction

establishment of integrated proviral latency

viral latency

establishment of viral latency

viral gene expression

viral translational frameshifting

viral translation

viral genome integration into host DNA

Q [auth a],
R [auth b],
S [auth c],
T [auth d],
U [auth e],

PC4 and SFRS1-interacting protein

ribonucleoprotein complex biogenesis

RNA metabolic process

mRNA processing

protein-RNA complex assembly

nucleobase-containing compound metabolic process

RNA biosynthetic process

cellular component organization

cellular component biogenesis

nucleic acid biosynthetic process

spliceosomal complex assembly

protein-RNA complex organization

cellular component assembly

protein-containing complex assembly

RNA processing

intracellular organelle

cellular anatomical structure

intracellular anatomical structure

organelle

membraneless organelle

intracellular membraneless organelle

membrane-bounded organelle

nucleus

membrane-enclosed lumen

AA [auth T],
BA [auth U]

DNA EV392

CA [auth W],
EA [auth Y]

DNA EV306

DA [auth X],
FA [auth Z]

DNA EV391

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036157	dUTPase-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001969	Aspartic peptidase, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR029054	dUTPase-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR018061	Retropepsins	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR002156	Ribonuclease H domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001584	Integrase, catalytic core	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR033704	dUTPase, trimeric	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001037	Integrase, C-terminal, retroviral	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR000477	Reverse transcriptase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR010659	Reverse transcriptase connection	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily
Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth g], W [auth h], X [auth i], Y [auth j], Z [auth k]	IPR021567	Lens epithelium-derived growth factor, integrase-binding domain	Domain
Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth g], W [auth h], X [auth i], Y [auth j], Z [auth k]	IPR036218	HIV integrase-binding domain superfamily	Homologous Superfamily
Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth g], W [auth h], X [auth i], Y [auth j], Z [auth k]	IPR000313	PWWP domain	Domain
Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth g], W [auth h], X [auth i], Y [auth j], Z [auth k]	IPR035441	TFIIS/LEDGF domain superfamily	Homologous Superfamily

Chains	Drug Target	Associated Disease
Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth g], W [auth h], X [auth i], Y [auth j], Z [auth k]	: O75475	acute myeloid leukemia psoriasis astrocytic tumor Down syndrome invasive ductal breast carcinoma lung cancer malignant glioma ovarian cancer Sjogren syndrome Acute Myeloid Leukemia (AML-M2) atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant mesothelioma acute myeloid leukemia psoriasis astrocytic tumor Down syndrome invasive ductal breast carcinoma lung cancer malignant glioma ovarian cancer Sjogren syndrome Acute Myeloid Leukemia (AML-M2) atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant mesothelioma progressive supranuclear palsy tuberculosis dermatomyositis hepatocellular carcinoma lung adenocarcinoma malignant ependymoma medulloblastoma

Chains

Drug Target

Associated Disease

Q [auth a],
R [auth b],
S [auth c],
T [auth d],
U [auth e],