Annotations: 9RPQ

MeCP2 MBD domain (P152R) in complex with hydroxymethylated CA repeat DNA

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	DNA (5'-D(APTPAPTPAPAPTPTPGPTPGPTPGPTPGPTPGPCPAPG)-3')	-	-	-
B	DNA (5'-D(TPCPTPGPCPAPCPAP(5HC)PAPCPAPCPAPAPTPTPAPTPA)-3')	-	-	-
A	Methyl-CpG-binding protein 2	binding nucleic acid binding regulatory RNA binding RNA binding siRNA binding DNA binding double-stranded DNA binding double-stranded methylated DNA binding chromatin binding molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity promoter-specific chromatin binding transcription corepressor activity binding nucleic acid binding regulatory RNA binding RNA binding siRNA binding DNA binding double-stranded DNA binding double-stranded methylated DNA binding chromatin binding molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity promoter-specific chromatin binding transcription corepressor activity transcription regulator activity transcription coregulator activity mRNA binding histone reader activity chromatin-protein adaptor activity sequence-specific DNA binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding methyl-CpG binding small molecule binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of gene expression via chromosomal CpG island methylation cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis epigenetic regulation of gene expression negative regulation of gene expression negative regulation of gene expression, epigenetic positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization positive regulation of cellular component organization microtubule cytoskeleton organization positive regulation of biological process cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly microtubule polymerization or depolymerization cellular component assembly positive regulation of protein polymerization protein-containing complex assembly positive regulation of cellular process protein polymerization positive regulation of microtubule nucleation positive regulation of microtubule polymerization or depolymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process microtubule polymerization regulation of cellular component biogenesis positive regulation of supramolecular fiber organization regulation of microtubule nucleation regulation of organelle organization organelle organization microtubule nucleation regulation of microtubule polymerization regulation of protein polymerization positive regulation of microtubule polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization cytoskeleton organization regulation of microtubule cytoskeleton organization developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development animal gross anatomical part developmental process system development smooth muscle cell differentiation regulation of developmental process negative regulation of developmental process regulation of smooth muscle cell differentiation negative regulation of muscle cell differentiation regulation of cell differentiation muscle cell differentiation muscle structure development negative regulation of smooth muscle cell differentiation regulation of muscle cell differentiation negative regulation of cell differentiation negative regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration negative regulation of cell motility blood vessel endothelial cell migration cell migration cell motility locomotion negative regulation of cell migration behavior system process learning learning or memory nervous system process cognition associative learning angiogenesis regulation of vasculature development tube morphogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development anatomical structure morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis negative regulation of multicellular organismal process sexual reproduction reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation epigenetic programming of gene expression multicellular organismal reproductive process genomic imprinting germ cell development transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell communication Notch signaling pathway signal transduction	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle nucleus intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin chromosome heterochromatin

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016177	DNA-binding domain superfamily	Homologous Superfamily
A	IPR001739	Methyl-CpG DNA binding	Domain
A	IPR045138	Methyl-CpG binding protein MeCP2/MBD4	Family
A	IPR017353	Methyl-CpG binding protein MeCP2	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P51608	Rett syndrome severe neonatal-onset encephalopathy with microcephaly syndromic X-linked intellectual disability Lubs type Angelman syndrome intellectual disability X-linked intellectual disability-psychosis-macroorchidism syndrome pervasive developmental disorder visual epilepsy pulmonary fibrosis atypical Rett syndrome autism, susceptibility to, X-linked 3 cocaine abuse MECP2 duplication syndrome epilepsy rheumatoid arthritis Rett syndrome severe neonatal-onset encephalopathy with microcephaly syndromic X-linked intellectual disability Lubs type Angelman syndrome intellectual disability X-linked intellectual disability-psychosis-macroorchidism syndrome pervasive developmental disorder visual epilepsy pulmonary fibrosis atypical Rett syndrome autism, susceptibility to, X-linked 3 cocaine abuse MECP2 duplication syndrome epilepsy rheumatoid arthritis autism cocaine dependence respiratory failure malignant mesothelioma anxiety disorder hepatocellular carcinoma subependymal giant cell astrocytoma learning disability osteosarcoma developmental disability microcephaly fragile X syndrome astrocytic tumor idiopathic interstitial pneumonia large cell medulloblastoma malignant glioma autism spectrum disorder Sjogren syndrome celiac disease systemic lupus erythematosus

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9RPQ | pdb_00009rpq

MeCP2 MBD domain (P152R) in complex with hydroxymethylated CA repeat DNA

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation