9ROT | pdb_00009rot

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
G [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
F [auth E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
D [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
FA [auth 7]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
FA [auth 7]PF22042Elongation factor G domain 2 (EF-G_D2)Elongation factor G domain 2Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ...Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in other translation factors such as translation initiation factor IF-2, peptide chain release factor, etc.
Domain
CA [auth 4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
CA [auth 4]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
Z [auth G]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
Y [auth D]PF21251Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N)Small ribosomal subunit protein uS5m, N-terminalThis entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ...This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].
Domain
Y [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
Y [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
X [auth Z]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
V [auth X]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
T [auth U]PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
B [auth 1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
S [auth T]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
R [auth S]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
Q [auth R]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
P [auth Q]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
O [auth P]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
N [auth O]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
M [auth N]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
L [auth M]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
K [auth L]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
J [auth K]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
A [auth 0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
28S ribosomal protein S11, mitochondrial
28S ribosomal protein S10, mitochondrial-
G [auth F]28S ribosomal protein S7, mitochondrial
F [auth E]28S ribosomal protein S6, mitochondrial
E [auth C]28S ribosomal protein S24, mitochondrial
D [auth B]28S ribosomal protein S2, mitochondrial
GA [auth a]Putative ribosome-binding factor A, mitochondrial
FA [auth 7]Translation initiation factor IF-2, mitochondrial
EA [auth A]12S mitochondrial rRNA---
DA [auth b]12S rRNA N4-methylcytidine (m4C) methyltransferase
C [auth 3]Aurora kinase A-interacting protein-
CA [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
BA [auth V]28S ribosomal protein S27, mitochondrial
AA [auth J]28S ribosomal protein S12, mitochondrial
Z [auth G]28S ribosomal protein S9, mitochondrial
Y [auth D]28S ribosomal protein S5, mitochondrial
X [auth Z]28S ribosomal protein S33, mitochondrial
W [auth Y]28S ribosomal protein S31, mitochondrial
V [auth X]28S ribosomal protein S29, mitochondrial
U [auth W]28S ribosomal protein S28, mitochondrial
T [auth U]28S ribosomal protein S26, mitochondrial
B [auth 1]28S ribosomal protein S35, mitochondrial
S [auth T]28S ribosomal protein S25, mitochondrial
R [auth S]28S ribosomal protein S23, mitochondrial
Q [auth R]28S ribosomal protein S22, mitochondrial
P [auth Q]Small ribosomal subunit protein bS21m
O [auth P]28S ribosomal protein S18c, mitochondrial
N [auth O]28S ribosomal protein S18b, mitochondrial
M [auth N]28S ribosomal protein S17, mitochondrial
L [auth M]28S ribosomal protein S16, mitochondrial
K [auth L]28S ribosomal protein S15, mitochondrial
J [auth K]28S ribosomal protein S14, mitochondrial
A [auth 0]28S ribosomal protein S34, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001971Small ribosomal subunit protein uS11Family
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR040055Small ribosomal subunit protein uS10mFamily
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
G [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth F]IPR000235Small ribosomal subunit protein uS7Family
G [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth E]IPR000529Small ribosomal subunit protein bS6Family
F [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
E [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
D [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
D [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
D [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
D [auth B]IPR001865Small ribosomal subunit protein uS2Family
GA [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
GA [auth a]IPR039212Ribosome-binding factor A, mitochondrialFamily
GA [auth a]IPR020053Ribosome-binding factor A, conserved siteConserved Site
GA [auth a]IPR023799Ribosome-binding factor A domain superfamilyHomologous Superfamily
GA [auth a]IPR000238Ribosome-binding factor AFamily
FA [auth 7]IPR005225Small GTP-binding domainDomain
FA [auth 7]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
FA [auth 7]IPR000795Translational (tr)-type GTP-binding domainDomain
FA [auth 7]IPR053905Elongation factor G-like, domain IIDomain
FA [auth 7]IPR044145Translation initiation factor IF-2, domain IIDomain
FA [auth 7]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth 7]IPR015760Translation initiation factor IF- 2Family
FA [auth 7]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
FA [auth 7]IPR023115Translation initiation factor IF- 2, domain 3Domain
FA [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth b]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
DA [auth b]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
DA [auth b]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
C [auth 3]IPR013177Ribosomal protein bS22, C-terminalDomain
CA [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
CA [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
CA [auth 4]IPR002885Pentatricopeptide repeatRepeat
CA [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
BA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth V]IPR002885Pentatricopeptide repeatRepeat
BA [auth V]IPR019266Small ribosomal subunit protein mS27Family
BA [auth V]IPR034913mS27/PTCD2Family
AA [auth J]IPR006032Small ribosomal subunit protein uS12Family
AA [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
AA [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Z [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
Z [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Z [auth G]IPR000754Small ribosomal subunit protein uS9Family
Z [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Y [auth D]IPR000851Small ribosomal subunit protein uS5Family
Y [auth D]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
Y [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
Y [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
Y [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
Y [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
X [auth Z]IPR013219Small ribosomal subunit protein mS33Family
W [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
V [auth X]IPR019368Small ribosomal subunit protein mS29Family
V [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
V [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
T [auth U]IPR026140Small ribosomal subunit protein mS26Family
B [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
B [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
S [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
S [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
S [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
R [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
R [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
R [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
Q [auth R]IPR019374Small ribosomal subunit protein mS22Family
P [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
P [auth Q]IPR001911Small ribosomal subunit protein bS21Family
O [auth P]IPR001648Small ribosomal subunit protein bS18Family
O [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
O [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
N [auth O]IPR040054Small ribosomal subunit protein mS40Family
N [auth O]IPR001648Small ribosomal subunit protein bS18Family
N [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
M [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
M [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth N]IPR000266Small ribosomal subunit protein uS17Family
L [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
L [auth M]IPR000307Small ribosomal subunit protein bS16Family
K [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
K [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
K [auth L]IPR052137Universal small ribosomal subunit uS15Family
K [auth L]IPR000589Small ribosomal subunit protein uS15Family
J [auth K]IPR001209Small ribosomal subunit protein uS14Family
A [auth 0]IPR032053Small ribosomal subunit protein mS34Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
P82912
P82664
G [auth F]Q9Y2R9
F [auth E]P82932
D [auth B]Q9Y399
GA [auth a]Q8N0V3
FA [auth 7]P46199
DA [auth b]A6NJ78
C [auth 3]Q9NWT8
CA [auth 4]Q96EY7
BA [auth V]Q92552
AA [auth J]O15235
Z [auth G]P82933
Y [auth D]P82675
X [auth Z]Q9Y291
W [auth Y]Q92665
V [auth X]P51398
U [auth W]Q9Y2Q9
B [auth 1]P82673
S [auth T]P82663
R [auth S]Q9Y3D9
Q [auth R]P82650
P [auth Q]P82921
O [auth P]Q9Y3D5
N [auth O]Q9Y676
M [auth N]Q9Y2R5
L [auth M]Q9Y3D3
K [auth L]P82914
J [auth K]O60783
A [auth 0]P82930

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
5F0
EA [auth A]MA6 Parent Component: A

P [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359