Annotations: 9RDC

Crystal structure of Phytophthora infestans effector AVRcap1b in complex with the ENTH domain of Nicotiana benthamiana NbTOL9a protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cas13a_C	e9rdcD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cas13a_C	ECOD (v295.2)
A	Adcy_cons_dom	e9rdcA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Adcy_cons_dom	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00790	VHS domain (VHS)	VHS domain	-	Repeat
A, B	PF22748	Effector PexRD54, WY-domain (PexRD54_WY)	Effector PexRD54, WY-domain	This entry represents homologous WY domains of the RxLR effector PexRD54 and other related proteins. The WY domain is a conserved structural unit consisting of three alpha-helices and two characteristic hydrophobic amino acids, frequently W (Trp) and ...	This entry represents homologous WY domains of the RxLR effector PexRD54 and other related proteins. The WY domain is a conserved structural unit consisting of three alpha-helices and two characteristic hydrophobic amino acids, frequently W (Trp) and Y (Tyr), which contribute to a stable hydrophobic core.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Target of myb protein 1	ion binding binding anion binding phosphatidylinositol binding small molecule binding protein binding ubiquitin binding ubiquitin-like protein binding	establishment of protein localization cellular localization catabolic process transport establishment of protein localization to vacuole macromolecule catabolic process vesicle-mediated transport localization late endosome to vacuole transport modification-dependent macromolecule catabolic process late endosome to vacuole transport via multivesicular body sorting pathway establishment of localization in cell protein metabolic process intracellular protein localization establishment of protein localization cellular localization catabolic process transport establishment of protein localization to vacuole macromolecule catabolic process vesicle-mediated transport localization late endosome to vacuole transport modification-dependent macromolecule catabolic process late endosome to vacuole transport via multivesicular body sorting pathway establishment of localization in cell protein metabolic process intracellular protein localization endosome transport via multivesicular body sorting pathway protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway primary metabolic process protein localization to vacuole intracellular transport protein catabolic process establishment of localization endosomal transport establishment of protein localization to organelle protein transport modification-dependent protein catabolic process multivesicular body sorting pathway protein localization to organelle macromolecule localization ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway ubiquitin-dependent protein catabolic process metabolic process cellular process vacuolar transport macromolecule metabolic process intracellular protein transport	cellular anatomical structure membrane intracellular anatomical structure cytoplasm
A, B	RxLR effector protein PITG_16705	-	-	cellular anatomical structure extracellular region host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR004152	GAT domain	Domain
C, D	IPR002014	VHS domain	Domain
C, D	IPR008942	ENTH/VHS	Homologous Superfamily
C, D	IPR044836	TOM1-like protein, plant	Family
C, D	IPR038425	GAT domain superfamily	Homologous Superfamily
A, B	IPR031825	RXLR phytopathogen effector protein	Domain
A, B	IPR054463	RxLR effector PexRD54, WY domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9RDC | pdb_00009rdc

Crystal structure of Phytophthora infestans effector AVRcap1b in complex with the ENTH domain of Nicotiana benthamiana NbTOL9a protein

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage