9RCV | pdb_00009rcv

Structure of the Human Peptide-Loading Complex Arrested by HCMV US6


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyABC transporter-like P-loop ATPases 8057805 3002020 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00664ABC transporter transmembrane region (ABC_membrane)ABC transporter transmembrane region- Family
PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
D, H
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
B, F
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF00664ABC transporter transmembrane region (ABC_membrane)ABC transporter transmembrane region- Family
PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Unique short US6 glycoprotein
Antigen peptide transporter 2
D, H
Beta-2-microglobulin
C, G
MHC class I antigen-
B, F
Tapasin
Antigen peptide transporter 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR035129Viral unique short region 6Family
IPR003439ABC transporter-like, ATP-binding domainDomain
IPR003593AAA+ ATPase domainDomain
IPR011527ABC transporter type 1, transmembrane domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR005293Antigen peptide transporter 2Family
IPR017871ABC transporter-like, conserved siteConserved Site
IPR013305ABC transporter Tap-likeFamily
IPR036640ABC transporter type 1, transmembrane domain superfamilyHomologous Superfamily
IPR039421Type 1 protein exporterFamily
D, H
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D, H
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
D, H
IPR013783Immunoglobulin-like foldHomologous Superfamily
D, H
IPR007110Immunoglobulin-like domainDomain
D, H
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
D, H
IPR003597Immunoglobulin C1-setDomain
D, H
IPR015707Beta-2-MicroglobulinFamily
C, G
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C, G
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
C, G
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
C, G
IPR003597Immunoglobulin C1-setDomain
C, G
IPR010579MHC class I, alpha chain, C-terminalDomain
C, G
IPR013783Immunoglobulin-like foldHomologous Superfamily
C, G
IPR011161MHC class I-like antigen recognition-likeDomain
C, G
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
C, G
IPR007110Immunoglobulin-like domainDomain
C, G
IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
C, G
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B, F
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B, F
IPR003597Immunoglobulin C1-setDomain
B, F
IPR008056TapasinFamily
B, F
IPR050380Immune Recognition and Response ModulatorsFamily
B, F
IPR013783Immunoglobulin-like foldHomologous Superfamily
B, F
IPR007110Immunoglobulin-like domainDomain
IPR003439ABC transporter-like, ATP-binding domainDomain
IPR003593AAA+ ATPase domainDomain
IPR011527ABC transporter type 1, transmembrane domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR017871ABC transporter-like, conserved siteConserved Site
IPR013305ABC transporter Tap-likeFamily
IPR036640ABC transporter type 1, transmembrane domain superfamilyHomologous Superfamily
IPR039421Type 1 protein exporterFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ03519
D, H
PharosP61769
B, F
PharosO15533
PharosQ03518