9R87 | pdb_00009r87

Cap of the vault protein from Human Brain

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_S18	e9r87A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
AA [auth N]	Ribosomal_S18	e9r87N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
B [auth A1]	Ribosomal_S18	e9r87A1_1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
BA [auth O]	Ribosomal_S18	e9r87O1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
C [auth A2]	Ribosomal_S18	e9r87A21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
CA [auth P]	Ribosomal_S18	e9r87P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
D [auth A3]	Ribosomal_S18	e9r87A31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
DA [auth Q]	Ribosomal_S18	e9r87Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
E [auth A4]	Ribosomal_S18	e9r87A41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
EA [auth R]	Ribosomal_S18	e9r87R1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
F [auth Ar]	Ribosomal_S18	e9r87Ar1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
FA [auth S]	Ribosomal_S18	e9r87S1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
G [auth As]	Ribosomal_S18	e9r87As1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
GA [auth T]	Ribosomal_S18	e9r87T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
H [auth At]	Ribosomal_S18	e9r87At1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
HA [auth U]	Ribosomal_S18	e9r87U1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
I [auth Au]	Ribosomal_S18	e9r87Au1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
IA [auth V]	Ribosomal_S18	e9r87V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
J [auth Av]	Ribosomal_S18	e9r87Av1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
JA [auth W]	Ribosomal_S18	e9r87W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
K [auth Aw]	Ribosomal_S18	e9r87Aw1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
KA [auth X]	Ribosomal_S18	e9r87X1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
LA [auth Y]	Ribosomal_S18	e9r87Y1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
M [auth Ay]	Ribosomal_S18	e9r87Ay1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
MA [auth Z]	Ribosomal_S18	e9r87Z1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
N [auth Az]	Ribosomal_S18	e9r87Az1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
O [auth B]	Ribosomal_S18	e9r87B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
P [auth C]	Ribosomal_S18	e9r87C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
Q [auth D]	Ribosomal_S18	e9r87D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
R [auth E]	Ribosomal_S18	e9r87E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
S [auth F]	Ribosomal_S18	e9r87F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
T [auth G]	Ribosomal_S18	e9r87G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
U [auth H]	Ribosomal_S18	e9r87H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
V [auth I]	Ribosomal_S18	e9r87I1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
W [auth J]	Ribosomal_S18	e9r87J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
X [auth K]	Ribosomal_S18	e9r87K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
Y [auth L]	Ribosomal_S18	e9r87L1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
Z [auth M]	Ribosomal_S18	e9r87M1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
L [auth Ax]	Ribosomal_S18	e9r87Ax1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	Major vault protein	protein phosphatase binding phosphatase binding protein binding binding enzyme binding kinase binding protein kinase binding identical protein binding	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport establishment of protein localization protein transport intracellular protein localization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport establishment of protein localization protein transport intracellular protein localization cell population proliferation cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of biological process regulation of signaling regulation of ERBB signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway regulation of cell communication intracellular signal transduction protein activation cascade biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol protein-containing complex cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope nuclear envelope nuclear pore membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular organelle lumen organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle cytoskeleton membraneless organelle intracellular membraneless organelle vesicle lumen cytoplasmic vesicle lumen secretory granule lumen perinuclear region of cytoplasm ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR041136	Major vault protein repeat domain 4	Domain
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR036013	Band 7/SPFH domain superfamily	Homologous Superfamily
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR041139	Major vault protein repeat domain	Domain
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR043023	Major vault protein repeat domain superfamily	Homologous Superfamily
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR043179	Major vault protein repeat domain 2 superfamily	Homologous Superfamily
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR040989	Major vault protein repeat domain 3	Domain
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR039059	Major vault protein	Family
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR002499	Major vault protein, N-terminal	Repeat
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR021870	Major vault protein, shoulder domain	Domain
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR041134	Major vault protein repeat domain 2	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], A, AA [auth N], B [auth A1], BA [auth O], C [auth A2], CA [auth P], D [auth A3], DA [auth Q], E [auth A4], EA [auth R], F [auth Ar], FA [auth S], G [auth As], GA [auth T], H [auth At], HA [auth U], I [auth Au], IA [auth V], J [auth Av], JA [auth W], K [auth Aw], KA [auth X], L [auth Ax], LA [auth Y], M [auth Ay], MA [auth Z], N [auth Az], O [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	: Q14764	Liver Cirrhosis, Experimental autism spectrum disorder juvenile dermatomyositis malignant mesothelioma osteoarthritis susceptibility 1 pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia subependymal giant cell astrocytoma dental caries myopathy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma tuberculosis glioblastoma malignant ependymoma Liver Cirrhosis, Experimental autism spectrum disorder juvenile dermatomyositis malignant mesothelioma osteoarthritis susceptibility 1 pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia subependymal giant cell astrocytoma dental caries myopathy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma tuberculosis glioblastoma malignant ependymoma osteoarthritis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm psoriasis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.