9QZC | pdb_00009qzc

Proximal A-C linker of Tetrahymena centriole, one repeating unit

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth AM]	Ribosomal_S2	e9qzcAM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_S2	ECOD (v295.2)
G [auth AU]	V-set	e9qzcAU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
D [auth 7]	LRR_6, LRR_TMOD-LMOD, LRR_NLRC3	e9qzc71	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: LRR_6, LRR_TMOD-LMOD, LRR_NLRC3	ECOD (v295.2)
A [auth i]	Acetyltransf_8	e9qzci1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F: Acetyltransf_8	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth AM]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
E [auth AE], G [auth AU]	PF00566	Rab-GTPase-TBC domain (RabGAP-TBC)	Rab-GTPase-TBC domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L [auth Bw]	Unknown Protein Chain	-	-	-
J [auth Az], K [auth A7]	SWIM-type domain-containing protein	-	-	-
I [auth As]	Unknown Protein Chain	-	-	-
H [auth Ac]	Unknown Protein Chain	-	-	-
F [auth AM]	POC1 centriolar protein homolog	-	microtubule organizing center organization microtubule cytoskeleton organization cellular component organization organelle organization centrosome cycle cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization cell cycle process cell projection organization	membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle ciliary basal body cell projection microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule cytoskeleton
E [auth AE], G [auth AU]	TBC1 domain family member 31	-	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly	membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle ciliary basal body cell projection microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule cytoskeleton membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle ciliary basal body cell projection microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule cytoskeleton centrosome centriolar satellite
D [auth 7]	Rab-GAP TBC domain-containing protein	-	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly	membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle ciliary basal body cell projection microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule cytoskeleton membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle ciliary basal body cell projection microtubule organizing center cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule cytoskeleton centrosome
B [auth q], C [auth y]	Centrosomal protein, putative	-	-	intracellular organelle microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton
R [auth Cc]	Unknown Protein Chain	-	-	-
Q [auth CV]	Unknown Protein Chain	-	-	-
P [auth CO]	Unknown Protein Chain	-	-	-
O [auth CH]	Unknown Protein Chain	-	-	-
N [auth CA]	Unknown Protein Chain	-	-	-
M [auth B4]	Unknown Protein Chain	-	-	-
A [auth i]	WD repeat WRAP73-like protein, putative	-	-	intracellular organelle microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton protein-containing complex MWP complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth AM]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
F [auth AM]	IPR001680	WD40 repeat	Repeat
F [auth AM]	IPR019775	WD40 repeat, conserved site	Conserved Site
F [auth AM]	IPR056551	Nucleolar protein 10-like, N-terminal domain	Domain
F [auth AM]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
F [auth AM]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
E [auth AE], G [auth AU]	IPR035969	Rab-GAP-TBC domain superfamily	Homologous Superfamily
E [auth AE], G [auth AU]	IPR001680	WD40 repeat	Repeat
E [auth AE], G [auth AU]	IPR000195	Rab-GAP-TBC domain	Domain
E [auth AE], G [auth AU]	IPR019775	WD40 repeat, conserved site	Conserved Site
E [auth AE], G [auth AU]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
E [auth AE], G [auth AU]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
E [auth AE], G [auth AU]	IPR051570	TBC1 domain family involved in cilium biogenesis	Family
D [auth 7]	IPR035969	Rab-GAP-TBC domain superfamily	Homologous Superfamily
D [auth 7]	IPR000195	Rab-GAP-TBC domain	Domain
D [auth 7]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
D [auth 7]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
D [auth 7]	IPR051570	TBC1 domain family involved in cilium biogenesis	Family
B [auth q], C [auth y]	IPR051877	Centriole and Basal Body Structural Protein	Family
A [auth i]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth i]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A [auth i]	IPR052778	Centrosome-associated WD domain-containing protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.