9QX1 | pdb_00009qx1

Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term dimer interface focused refinement)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B]	UBR-type domain-containing protein	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
B [auth C], D	KCMF1	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity	regulation of signaling regulation of biological process signaling biological regulation synaptic signaling cell-cell signaling cellular process cell communication regulation of cellular process regulation of cell communication	cellular anatomical structure synapse cell junction cell periphery plasma membrane membrane membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle cellular anatomical structure synapse cell junction cell periphery plasma membrane membrane membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle late endosome cytoplasm vesicle lytic vacuole vacuole lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B]	IPR025704	E3 ubiquitin ligase UBR4, C-terminal	Domain
A, C [auth B]	IPR045189	E3 ubiquitin ligase UBR4-like	Family
A, C [auth B]	IPR003126	Zinc finger, UBR-type	Domain
A, C [auth B]	IPR004190	DNA polymerase processivity factor	Domain
A, C [auth B]	IPR056530	E3 ubiquitin-protein ligase UBR4-like domain	Domain
B [auth C], D	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
B [auth C], D	IPR008598	Di19, zinc-binding domain	Domain
B [auth C], D	IPR050774	KCMF1 and Dystrophin	Family
B [auth C], D	IPR000433	Zinc finger, ZZ-type	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term dimer interface focused refinement)

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

9QX1 | pdb_00009qx1