Annotations: 9QRW

S.aureus ClpC dodecameric resting state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth B]	Ribosomal_S18	e9qrwB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
K [auth G]	Ribosomal_S18	e9qrwG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
J [auth F]	Ribosomal_S18	e9qrwF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
I [auth E]	Ribosomal_S18	e9qrwE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
H [auth D]	Ribosomal_S18	e9qrwD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
G [auth C]	Ribosomal_S18	e9qrwC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
F [auth I]	Ribosomal_S18	e9qrwI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
E [auth J]	Ribosomal_S18	e9qrwJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
D [auth K]	Ribosomal_S18	e9qrwK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
C [auth L]	Ribosomal_S18	e9qrwL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
B [auth M]	Ribosomal_S18	e9qrwM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)
A [auth N]	Ribosomal_S18	e9qrwN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S18	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	PF10431	C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)	C-terminal, D2-small domain, of ClpB protein	This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ...	This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly [1]. The domain is associated with two Clp_N, Pfam:PF02861, at the N-terminus as well as AAA, Pfam:PF00004 and AAA_2, Pfam:PF07724.	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	PF17871	AAA lid domain (AAA_lid_9)	AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	PF02861	Clp repeat (R) N-terminal domain (Clp_N)	Clp repeat (R) N-terminal domain	-	Family
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	PF07724	AAA domain (Cdc48 subfamily) (AAA_2)	AAA domain (Cdc48 subfamily)	This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	ATP-dependent Clp protease ATP-binding subunit ClpC	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein folding chaperone	response to copper ion response to stimulus response to metal ion response to chemical response to stress stress response to copper ion stress response to metal ion stress response to cadmium ion response to cadmium ion	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR001270	ClpA/B family	Family
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR018368	ClpA/B, conserved site 1	Conserved Site
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR041546	ClpA/ClpB, AAA lid domain	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR004176	Clp, repeat (R) N-terminal domain	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR028299	ClpA/B, conserved site 2	Conserved Site
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR003593	AAA+ ATPase domain	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR003959	ATPase, AAA-type, core	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR001943	UVR domain	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR019489	Clp ATPase, C-terminal	Domain
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], A [auth N], B [auth M], C [auth L], D [auth K], E [auth J], F [auth I], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9QRW | pdb_00009qrw

S.aureus ClpC dodecameric resting state

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage