9QGL | pdb_00009qgl

Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], ZA [auth 4D]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], VA [auth 3F]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], VA [auth 3F]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
AA [auth 9C], BA [auth 9D], CA [auth 9E], DA [auth 9F], Y [auth 9A], AA [auth 9C], BA [auth 9D], CA [auth 9E], DA [auth 9F], Y [auth 9A], Z [auth 9B]	PF04965	Baseplate wedge protein gp25 (GPW_gp25)	Baseplate wedge protein gp25	This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to att ...	This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to attach to and penetrate host cell membranes. Gp25 is a component of the conserved wedge in the inner part of the baseplate and serves as a nucleus for sheath polymerisation, playing a critical role in sheath assembly and contraction [1,2]. The EPR motif (Glu-Pro-Arg, residues 85-87 of gp25) is conserved across all members of the family including orthologues from the RpoS-mediated general stress response system (called IraD) [3,4]. This motif interacts with the 'core bundle' composed of orthologues of T4 gp6 and gp7 proteins in contractile injection systems.	Domain
S [auth 7A], T [auth 7B], U [auth 7C], V [auth 7D], W [auth 7E], S [auth 7A], T [auth 7B], U [auth 7C], V [auth 7D], W [auth 7E], X [auth 7F]	PF19266	Contractile injection system tube protein (CIS_tube)	Contractile injection system tube protein	-	Family
M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	PF06841	T4-like virus tail tube protein gp19 (Phage_T4_gp19)	T4-like virus tail tube protein gp19	-	Family
G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], L [auth 2F]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F]	PF06841	T4-like virus tail tube protein gp19 (Phage_T4_gp19)	T4-like virus tail tube protein gp19	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], ZA [auth 4D]	Phage tail sheath family protein	-	-	-
QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], VA [auth 3F]	Phage tail sheath family protein	-	-	-
KA [auth a], LA [auth b], MA [auth c], NA [auth d], OA [auth e], KA [auth a], LA [auth b], MA [auth c], NA [auth d], OA [auth e], PA [auth f]	Baseplate protein J-like domain-containing protein	-	-	-
EA [auth A], FA [auth B], GA [auth C], HA [auth D], IA [auth E], EA [auth A], FA [auth B], GA [auth C], HA [auth D], IA [auth E], JA [auth F]	Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17	-	-	-
AA [auth 9C], BA [auth 9D], CA [auth 9E], DA [auth 9F], Y [auth 9A], AA [auth 9C], BA [auth 9D], CA [auth 9E], DA [auth 9F], Y [auth 9A], Z [auth 9B]	Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17	-	-	-
S [auth 7A], T [auth 7B], U [auth 7C], V [auth 7D], W [auth 7E], S [auth 7A], T [auth 7B], U [auth 7C], V [auth 7D], W [auth 7E], X [auth 7F]	Contractile injection system tube protein N-terminal domain-containing protein	-	-	-
M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	Phage tail protein	structural molecule activity	-	-
G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], L [auth 2F]	Phage tail sheath family protein	-	-	-
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F]	Phage tail protein	structural molecule activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], ZA [auth 4D]	IPR052042	Tail sheath structural protein	Family
AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], AB [auth 4E], BB [auth 4F], WA [auth 4A], XA [auth 4B], YA [auth 4C], ZA [auth 4D]	IPR020287	Tail sheath protein, C-terminal domain	Domain
QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], VA [auth 3F]	IPR052042	Tail sheath structural protein	Family
QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], VA [auth 3F]	IPR020287	Tail sheath protein, C-terminal domain	Domain
QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], QA [auth 3A], RA [auth 3B], SA [auth 3C], TA [auth 3D], UA [auth 3E], VA [auth 3F]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
AA [auth 9C], BA [auth 9D], CA [auth 9E], DA [auth 9F], Y [auth 9A], AA [auth 9C], BA [auth 9D], CA [auth 9E], DA [auth 9F], Y [auth 9A], Z [auth 9B]	IPR007048	IraD/Gp25-like	Domain
S [auth 7A], T [auth 7B], U [auth 7C], V [auth 7D], W [auth 7E], S [auth 7A], T [auth 7B], U [auth 7C], V [auth 7D], W [auth 7E], X [auth 7F]	IPR045361	Contractile injection system tube protein, N-terminal domain	Domain
M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	IPR011747	Conserved hypothetical protein CHP02241	Family
M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family
G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], L [auth 2F]	IPR052042	Tail sheath structural protein	Family
G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], G [auth 2A], H [auth 2B], I [auth 2C], J [auth 2D], K [auth 2E], L [auth 2F]	IPR020287	Tail sheath protein, C-terminal domain	Domain
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F]	IPR011747	Conserved hypothetical protein CHP02241	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.