9QF8 | pdb_00009qf8

Structure of the GH13 and MucBP domains of Ruminococcus bromii Amy10

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02922Carbohydrate-binding module 48 (Isoamylase N-terminal domain) (CBM_48)Carbohydrate-binding module 48 (Isoamylase N-terminal domain)This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. Domain
PF00128Alpha amylase, catalytic domain (Alpha-amylase)Alpha amylase, catalytic domainAlpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ...Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Domain
PF06458MucBP domain (MucBP)MucBP domainThe MucBP (MUCin-Binding Protein) domain is found in a wide variety of bacterial proteins, in several repeats. The domain is found in bacterial peptidoglycan bound proteins and is often found in conjunction with Pfam:PF00746 and Pfam:PF00560. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ruminococcus bromii Amy10 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR031965Starch-binding module 26Domain
IPR016134Dockerin domainDomain
IPR011840Pullulanase, type IDomain
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
IPR009459MucBP domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR006047Glycosyl hydrolase family 13, catalytic domainDomain
IPR036439Dockerin domain superfamilyHomologous Superfamily
IPR013780Glycosyl hydrolase, all-betaHomologous Superfamily
IPR004193Glycoside hydrolase, family 13, N-terminalDomain