9QF3 | pdb_00009qf3

Structure of the GH13 domain of Ruminococcus bromii Amy4

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00128Alpha amylase, catalytic domain (Alpha-amylase)Alpha amylase, catalytic domainAlpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ...Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ruminococcus bromii Amy4 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR031965Starch-binding module 26Domain
IPR002105Dockerin type I repeatRepeat
IPR016134Dockerin domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR018247EF-Hand 1, calcium-binding siteBinding Site
IPR006047Glycosyl hydrolase family 13, catalytic domainDomain
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
IPR036439Dockerin domain superfamilyHomologous Superfamily
IPR008965CBM2/CBM3, carbohydrate-binding domain superfamilyHomologous Superfamily