9QCS | pdb_00009qcs

Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth D],
D [auth H],
I [auth d],
P [auth h]
Histone H2B type 1-J
F [auth A],
J [auth E],
M [auth a],
Q [auth e]
Histone H3.1
S [auth i],
V [auth I]
153 bp DNA---
T [auth j],
U [auth J]
153 bp DNA---
W [auth K],
Y [auth M]
X-ray repair cross-complementing protein 6
X [auth L],
Z [auth N]
X-ray repair cross-complementing protein 5
G [auth B],
K [auth F],
N [auth b],
R [auth f]
Histone H4
C,
E [auth G],
H [auth c],
O [auth g]
Histone H2AX
A [auth O],
L [auth o]
DNA-dependent protein kinase catalytic subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth D],
D [auth H],
I [auth d],
P [auth h]
IPR009072Histone-foldHomologous Superfamily
B [auth D],
D [auth H],
I [auth d],
P [auth h]
IPR000558Histone H2BFamily
B [auth D],
D [auth H],
I [auth d],
P [auth h]
IPR007125Core Histone H2A/H2B/H3 domainDomain
B [auth D],
D [auth H],
I [auth d],
P [auth h]
IPR055333Histone H2B, conserved siteConserved Site
F [auth A],
J [auth E],
M [auth a],
Q [auth e]
IPR009072Histone-foldHomologous Superfamily
F [auth A],
J [auth E],
M [auth a],
Q [auth e]
IPR007125Core Histone H2A/H2B/H3 domainDomain
F [auth A],
J [auth E],
M [auth a],
Q [auth e]
IPR000164Histone H3/CENP-AFamily
W [auth K],
Y [auth M]
IPR016194SPOC-like, C-terminal domain superfamilyHomologous Superfamily
W [auth K],
Y [auth M]
IPR027388Ku70, bridge and pillars domain superfamilyHomologous Superfamily
W [auth K],
Y [auth M]
IPR036361SAP domain superfamilyHomologous Superfamily
W [auth K],
Y [auth M]
IPR006165Ku70Family
W [auth K],
Y [auth M]
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
W [auth K],
Y [auth M]
IPR005161Ku70/Ku80, N-terminal alpha/betaDomain
W [auth K],
Y [auth M]
IPR006164Ku70/Ku80, DNA-binding domainDomain
W [auth K],
Y [auth M]
IPR047087Ku70, core domainDomain
W [auth K],
Y [auth M]
IPR005160Ku70/Ku80 C-terminal armDomain
W [auth K],
Y [auth M]
IPR003034SAP domainDomain
X [auth L],
Z [auth N]
IPR036494Ku, C-terminal domain superfamilyHomologous Superfamily
X [auth L],
Z [auth N]
IPR016194SPOC-like, C-terminal domain superfamilyHomologous Superfamily
X [auth L],
Z [auth N]
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
X [auth L],
Z [auth N]
IPR002035von Willebrand factor, type ADomain
X [auth L],
Z [auth N]
IPR005161Ku70/Ku80, N-terminal alpha/betaDomain
X [auth L],
Z [auth N]
IPR014893Ku, C-terminalDomain
X [auth L],
Z [auth N]
IPR006164Ku70/Ku80, DNA-binding domainDomain
X [auth L],
Z [auth N]
IPR005160Ku70/Ku80 C-terminal armDomain
X [auth L],
Z [auth N]
IPR024193Ku80Family
G [auth B],
K [auth F],
N [auth b],
R [auth f]
IPR009072Histone-foldHomologous Superfamily
G [auth B],
K [auth F],
N [auth b],
R [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
G [auth B],
K [auth F],
N [auth b],
R [auth f]
IPR001951Histone H4Family
G [auth B],
K [auth F],
N [auth b],
R [auth f]
IPR019809Histone H4, conserved siteConserved Site
G [auth B],
K [auth F],
N [auth b],
R [auth f]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C,
E [auth G],
H [auth c],
O [auth g]
IPR002119Histone H2AFamily
C,
E [auth G],
H [auth c],
O [auth g]
IPR007125Core Histone H2A/H2B/H3 domainDomain
C,
E [auth G],
H [auth c],
O [auth g]
IPR032454Histone H2A, C-terminal domainDomain
C,
E [auth G],
H [auth c],
O [auth g]
IPR032458Histone H2A conserved siteConserved Site
C,
E [auth G],
H [auth c],
O [auth g]
IPR009072Histone-foldHomologous Superfamily
A [auth O],
L [auth o]
IPR016024Armadillo-type foldHomologous Superfamily
A [auth O],
L [auth o]
IPR003151PIK-related kinase, FATDomain
A [auth O],
L [auth o]
IPR046803DNA-dependent protein kinase catalytic subunit, CC1/2Domain
A [auth O],
L [auth o]
IPR046804DNA-PKcs, N-terminalDomain
A [auth O],
L [auth o]
IPR045581DNA-dependent protein kinase catalytic subunit, CC5Domain
A [auth O],
L [auth o]
IPR003152FATC domainDomain
A [auth O],
L [auth o]
IPR012582DNA-dependent protein kinase catalytic subunit, CC3Domain
A [auth O],
L [auth o]
IPR011989Armadillo-like helicalHomologous Superfamily
A [auth O],
L [auth o]
IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
A [auth O],
L [auth o]
IPR050517DNA Damage Response and Repair KinaseFamily
A [auth O],
L [auth o]
IPR018936Phosphatidylinositol 3-/4-kinase, conserved siteConserved Site
A [auth O],
L [auth o]
IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
A [auth O],
L [auth o]
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A [auth O],
L [auth o]
IPR037706DNA-dependent protein kinase catalytic subunit, catalytic domainDomain
A [auth O],
L [auth o]
IPR014009PIK-related kinase, FAT domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth D],
D [auth H],
I [auth d],
P [auth h]
PharosP06899
F [auth A],
J [auth E],
M [auth a],
Q [auth e]
PharosP68431
W [auth K],
Y [auth M]
PharosP12956
X [auth L],
Z [auth N]
PharosP13010
G [auth B],
K [auth F],
N [auth b],
R [auth f]
PharosP62805
C,
E [auth G],
H [auth c],
O [auth g]
PharosP16104
A [auth O],
L [auth o]
PharosP78527