Annotations: 9Q8M

VPS35-VPS26-SNX12 Complex

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth E]	Minor capsid protein L2	DNA binding binding nucleic acid binding structural molecule activity	biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction viral penetration into host nucleus symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid virion component host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm host cell Golgi apparatus host cellular component cellular anatomical structure host cell other organism part viral capsid virion component host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm host cell Golgi apparatus host cell cytoplasm part
C	Sorting nexin-12	ion binding binding anion binding phosphatidylinositol binding small molecule binding phospholipid binding lipid binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding protein binding enzyme binding	cellular localization transport intracellular transport late endosome to Golgi transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport regulation of protein maturation cellular localization transport intracellular transport late endosome to Golgi transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport regulation of protein maturation negative regulation of proteolysis regulation of cellular process negative regulation of protein maturation negative regulation of biological process regulation of primary metabolic process protein maturation regulation of proteolysis proteolysis negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of protein processing protein processing metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of protein processing regulation of localization import into cell regulation of cellular component organization regulation of transport cellular component organization cellular component organization or biogenesis endocytosis regulation of endocytosis negative regulation of protein transport establishment of protein localization regulation of protein localization regulation of establishment of protein localization negative regulation of establishment of protein localization negative regulation of transport regulation of protein transport protein transport macromolecule localization intracellular protein localization negative regulation of protein localization catabolic process macromolecule catabolic process negative regulation of protein catabolic process negative regulation of catabolic process protein catabolic process regulation of catabolic process regulation of protein catabolic process localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane regulation of intracellular transport negative regulation of intracellular transport regulation of vesicle-mediated transport vesicle-mediated transport between endosomal compartments regulation of early endosome to late endosome transport early endosome to late endosome transport regulation of cellular localization negative regulation of early endosome to late endosome transport	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle protein-containing complex membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle protein-containing complex membrane membrane protein complex retromer complex endosome membrane early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane
B	Vacuolar protein sorting-associated protein 26A	-	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport regulation of biological process catabolic process cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport regulation of biological process catabolic process regulation of cellular process macroautophagy autophagy biological regulation regulation of catabolic process regulation of autophagy regulation of macroautophagy metabolic process process utilizing autophagic mechanism regulation of metabolic process vesicle-mediated transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle protein-containing complex membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle protein-containing complex membrane membrane protein complex retromer complex retromer, cargo-selective complex cytosol endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane lytic vacuole vacuole lysosome tubular endosome
A	Vacuolar protein sorting-associated protein 35	D1 dopamine receptor binding protein binding binding signaling receptor binding G protein-coupled receptor binding dopamine receptor binding	regulation of cellular process positive regulation of biological process dopamine metabolic process catechol-containing compound metabolic process regulation of primary metabolic process biogenic amine biosynthetic process positive regulation of metabolic process catecholamine metabolic process positive regulation of biosynthetic process dopamine biosynthetic process catecholamine biosynthetic process catechol-containing compound biosynthetic process positive regulation of amine metabolic process positive regulation of cellular process regulation of cellular process positive regulation of biological process dopamine metabolic process catechol-containing compound metabolic process regulation of primary metabolic process biogenic amine biosynthetic process positive regulation of metabolic process catecholamine metabolic process positive regulation of biosynthetic process dopamine biosynthetic process catecholamine biosynthetic process catechol-containing compound biosynthetic process positive regulation of amine metabolic process positive regulation of cellular process positive regulation of dopamine biosynthetic process regulation of dopamine metabolic process regulation of biosynthetic process regulation of biological process regulation of amine metabolic process biological regulation primary metabolic process regulation of dopamine biosynthetic process positive regulation of dopamine metabolic process amine metabolic process biosynthetic process amine biosynthetic process phenol-containing compound metabolic process phenol-containing compound biosynthetic process metabolic process cellular process regulation of catecholamine metabolic process regulation of metabolic process biogenic amine metabolic process protein destabilization regulation of protein stability regulation of biological quality catabolic process macroautophagy autophagy regulation of catabolic process regulation of autophagy regulation of macroautophagy process utilizing autophagic mechanism cellular localization transport intracellular transport mitochondrion to lysosome vesicle-mediated transport lysosomal transport establishment of localization vesicle-mediated transport mitochondrion-derived vesicle mediated transport localization establishment of localization in cell vacuolar transport mitochondrial transport regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission signaling cell-cell signaling chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of cell communication regulation of localization establishment of protein localization regulation of protein localization positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport secretion by cell regulation of secretion by cell positive regulation of secretion signal release intracellular protein localization regulation of Wnt protein secretion secretion regulation of transport positive regulation of Wnt protein secretion establishment of protein localization to extracellular region regulation of establishment of protein localization export from cell regulation of protein transport Wnt protein secretion protein secretion positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of transport protein transport macromolecule localization positive regulation of protein localization positive regulation of signaling multicellular organismal process regulation of cellular component organization regulation of developmental process cellular component organization multicellular organism development anatomical structure development regulation of synapse structure or activity synapse organization cellular component organization or biogenesis system development developmental process nervous system development developmental maturation synapse maturation regulation of synapse organization regulation of synapse maturation cell junction organization animal gross anatomical part developmental process regulation of organelle organization organelle organization regulation of mitochondrion organization mitochondrion organization endosomal transport cytosolic transport retrograde transport, endosome to Golgi regulation of protein catabolic process in the vacuole negative regulation of biological process lysosomal protein catabolic process negative regulation of protein catabolic process in the vacuole macromolecule catabolic process negative regulation of protein catabolic process negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of protein metabolic process protein catabolic process in the vacuole negative regulation of metabolic process protein catabolic process negative regulation of lysosomal protein catabolic process regulation of lysosomal protein catabolic process regulation of protein catabolic process positive regulation of locomotion locomotion involved in locomotory behavior behavior regulation of behavior positive regulation of locomotion involved in locomotory behavior locomotory behavior positive regulation of behavior regulation of locomotion regulation of locomotion involved in locomotory behavior positive regulation of multicellular organismal process regulation of multicellular organismal process locomotion establishment of protein localization to plasma membrane endocytic recycling neurotransmitter receptor transport to plasma membrane neurotransmitter receptor transport, endosome to plasma membrane protein localization to cell periphery neurotransmitter receptor transport establishment of protein localization to membrane protein localization to plasma membrane localization within membrane protein localization to membrane protein-containing complex localization vesicle-mediated transport to the plasma membrane endosome to plasma membrane protein transport intracellular protein transport presynapse organization regulation of terminal button organization terminal button organization regulation of presynapse organization negative regulation of protein localization voluntary musculoskeletal movement multicellular organismal movement musculoskeletal movement system process nervous system process neuromuscular process protein localization to endosome protein localization to organelle regulation of presynapse assembly cellular component biogenesis cellular component assembly cell junction assembly regulation of synapse assembly regulation of cellular component biogenesis regulation of cell junction assembly synapse assembly presynapse assembly regulation of defense response response to stimulus regulation of response to external stimulus negative regulation of inflammatory response defense response negative regulation of response to stimulus response to external stimulus regulation of inflammatory response regulation of response to stimulus response to stress negative regulation of response to external stimulus regulation of response to stress negative regulation of defense response inflammatory response dendritic spine maintenance cell projection organization cellular component maintenance regulation of dendritic spine maintenance plasma membrane bounded cell projection organization dendritic spine organization postsynapse organization regulation of cell projection organization regulation of postsynapse organization neuron projection organization regulation of plasma membrane bounded cell projection organization positive regulation of protein metabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of protein localization to cell periphery regulation of protein localization to cell periphery lysosome organization vacuole organization lytic vacuole organization mitochondrial fragmentation involved in apoptotic process apoptotic mitochondrial changes apoptotic process cell death programmed cell death regulation of postsynapse assembly postsynapse assembly positive regulation of organelle organization positive regulation of cellular component organization positive regulation of developmental process regulation of anatomical structure morphogenesis organelle fission mitochondrial fission anatomical structure morphogenesis regulation of mitochondrial fission positive regulation of mitochondrial fission negative regulation of protein homooligomerization regulation of protein oligomerization regulation of protein homooligomerization regulation of protein-containing complex assembly protein-containing complex assembly protein homooligomerization negative regulation of protein oligomerization negative regulation of cellular component organization protein-containing complex organization negative regulation of protein-containing complex assembly protein complex oligomerization transcytosis late endosome to lysosome transport negative regulation of transport negative regulation of late endosome to lysosome transport regulation of intracellular transport negative regulation of intracellular transport negative regulation of vacuolar transport regulation of vacuolar transport regulation of cellular localization regulation of late endosome to lysosome transport cellular response to nitrogen compound cellular response to stimulus response to dopamine positive regulation of signal transduction cellular response to dopamine response to monoamine regulation of signal transduction regulation of dopamine receptor signaling pathway positive regulation of response to stimulus response to catecholamine cellular response to catecholamine stimulus signal transduction regulation of G protein-coupled receptor signaling pathway G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound positive regulation of G protein-coupled receptor signaling pathway cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical G protein-coupled receptor signaling pathway positive regulation of dopamine receptor signaling pathway cell surface receptor signaling pathway Wnt signaling pathway regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway positive regulation of Wnt signaling pathway positive regulation of canonical Wnt signaling pathway regulation of Wnt signaling pathway negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process protein localization to synapse neurotransmitter receptor transport to postsynaptic membrane establishment of protein localization to postsynaptic membrane neurotransmitter receptor transport, endosome to postsynaptic membrane protein localization to postsynaptic membrane regulation of postsynaptic membrane neurotransmitter receptor levels protein localization to postsynapse protein localization to cell junction receptor localization to synapse	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol synapse cell junction extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol synapse cell junction dopaminergic synapse glutamatergic synapse cell projection neuron projection plasma membrane bounded cell projection vacuolar membrane membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome intracellular vesicle mitochondrion-derived vesicle cytoplasmic vesicle perinuclear region of cytoplasm endosome membrane endosome endomembrane system cytoplasmic vesicle membrane vesicle membrane somatodendritic compartment cell body neuronal cell body protein-containing complex membrane protein complex retromer complex presynapse tubular endosome early endosome retromer, cargo-selective complex postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse late endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth E]	IPR000784	Late protein L2	Family
C	IPR001683	Phox homology	Domain
C	IPR036871	PX domain superfamily	Homologous Superfamily
C	IPR051074	Sorting Nexin	Family
B	IPR028934	Vacuolar protein sorting protein 26 related	Family
B	IPR014752	Arrestin-like, C-terminal domain superfamily	Homologous Superfamily
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR005378	Vacuolar protein sorting-associated protein 35	Family
A	IPR042491	Vacuolar protein sorting-associated protein 35, C-terminal	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	: Q9UMY4	breast cancer ovarian cancer
B	: O75436	type 2 diabetes mellitus dermatomyositis lymphoplasmacytic lymphoma plasma cell myeloma Diabetes Mellitus, Non-Insulin-Dependent maturity-onset diabetes of the young lung adenocarcinoma ovarian cancer
A	: Q96QK1	Parkinson disease Parkinson disease 17 schizophrenia Autosomal dominant late onset Parkinson disease intellectual disability neurodegenerative disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9Q8M | pdb_00009q8m

VPS35-VPS26-SNX12 Complex

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation