Annotations: 9PSL

Co-crystal structure of BAF60A (SMARCD1) in complex with PU.1 peptide

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G	PF02201	SWIB/MDM2 domain (SWIB)	SWIB/MDM2 domain	This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. Thi ...	This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2 [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Transcription factor PU.1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding STAT family protein binding histone deacetylase binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding STAT family protein binding histone deacetylase binding enzyme binding transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific cis-regulatory region sequence-specific DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity DNA-binding transcription repressor activity, RNA polymerase II-specific RNA polymerase II transcription regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding NFAT protein binding molecular sequestering activity protein sequestering activity	response to tumor cell response to stimulus defense response response to stress defense response to tumor cell response to biotic stimulus regulation of cellular process positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic cellular component organization RNA biosynthetic process nucleobase-containing compound metabolic process response to tumor cell response to stimulus defense response response to stress defense response to tumor cell response to biotic stimulus regulation of cellular process positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic cellular component organization RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization chromatin remodeling positive regulation of macromolecule metabolic process cellular component organization or biogenesis positive regulation of cellular process transcription initiation at RNA polymerase II promoter regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation regulation of gene expression biosynthetic process positive regulation of gene expression transcription initiation-coupled chromatin remodeling regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process developmental process multicellular organismal process cellular developmental process hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell activation immune system process cell differentiation lymphoid progenitor cell differentiation anatomical structure development T cell differentiation pro-T cell differentiation leukocyte differentiation hematopoietic progenitor cell differentiation mature B cell differentiation B cell activation involved in immune response cell activation involved in immune response B cell differentiation leukocyte activation involved in immune response lymphocyte activation involved in immune response mature B cell differentiation involved in immune response immune response follicular B cell differentiation B cell activation immune effector process regulation of cell adhesion negative regulation of biological process cell morphogenesis negative regulation of cell adhesion endothelial to hematopoietic transition anatomical structure morphogenesis cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion delamination negative regulation of metabolic process regulation of MHC class II biosynthetic process negative regulation of MHC class II biosynthetic process MHC class II biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process immature B cell differentiation positive regulation of DNA-templated transcription positive regulation of miRNA transcription positive regulation of miRNA metabolic process regulation of primary metabolic process regulation of RNA metabolic process miRNA transcription regulation of miRNA metabolic process regulation of nucleobase-containing compound metabolic process miRNA metabolic process regulation of RNA biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription regulation of miRNA transcription regulation of developmental process homeostatic process regulation of cell differentiation regulation of cell development multicellular organism development regulation of immune system process regulation of multicellular organismal process myeloid cell homeostasis erythrocyte homeostasis regulation of multicellular organismal development regulation of myeloid cell differentiation erythrocyte differentiation regulation of erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation regulation of hemopoiesis homeostasis of number of cells negative regulation of adipose tissue development connective tissue development adipose tissue development negative regulation of developmental process animal organ development tissue development regulation of adipose tissue development negative regulation of multicellular organismal process animal gross anatomical part developmental process cellular response to stimulus response to alcohol response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to alcohol response to chemical cellular response to ethanol response to ethanol regulation of myeloid progenitor cell differentiation myeloid progenitor cell differentiation regulation of hematopoietic progenitor cell differentiation regulation of defense response regulation of response to biotic stimulus positive regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus positive regulation of antifungal innate immune response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress innate immune response regulation of antifungal innate immune response response to external biotic stimulus positive regulation of immune system process antifungal innate immune response positive regulation of innate immune response response to other organism regulation of innate immune response defense response to symbiont response to external stimulus defense response to fungus regulation of defense response to fungus regulation of response to stimulus defense response to other organism positive regulation of defense response regulation of immune response response to fungus myeloid leukocyte differentiation negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation positive regulation of B cell differentiation positive regulation of developmental process positive regulation of cell activation positive regulation of leukocyte activation positive regulation of cell development positive regulation of multicellular organismal process positive regulation of lymphocyte activation regulation of B cell differentiation positive regulation of hemopoiesis positive regulation of cell differentiation regulation of B cell activation regulation of lymphocyte differentiation positive regulation of B cell activation positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation positive regulation of transcription by RNA polymerase II cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway signaling cellular response to transforming growth factor beta stimulus response to endogenous stimulus cell communication cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of immune effector process regulation of localization neutrophil activation regulation of myeloid leukocyte mediated immunity regulated exocytosis negative regulation of transport leukocyte degranulation myeloid leukocyte mediated immunity vesicle-mediated transport myeloid leukocyte activation localization negative regulation of secretion neutrophil activation involved in immune response establishment of localization in cell leukocyte mediated immunity negative regulation of secretion by cell negative regulation of myeloid leukocyte mediated immunity negative regulation of immune response negative regulation of immune effector process establishment of localization regulation of secretion regulation of leukocyte mediated immunity exocytosis cellular localization transport negative regulation of neutrophil degranulation negative regulation of regulated secretory pathway negative regulation of leukocyte degranulation regulation of regulated secretory pathway secretion by cell regulation of secretion by cell neutrophil mediated immunity negative regulation of exocytosis regulation of neutrophil degranulation neutrophil degranulation regulation of leukocyte degranulation secretion regulation of transport negative regulation of response to stimulus export from cell regulation of vesicle-mediated transport myeloid cell activation involved in immune response negative regulation of immune system process regulation of exocytosis negative regulation of leukocyte mediated immunity granulocyte activation pericyte cell differentiation negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of canonical NF-kappaB signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling negative regulation of signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction response to lipid cellular response to lipopolysaccharide lipopolysaccharide-mediated signaling pathway cellular response to biotic stimulus response to bacterium cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to lipid response to molecule of bacterial origin microglial cell mediated cytotoxicity positive regulation of leukocyte mediated immunity positive regulation of leukocyte mediated cytotoxicity positive regulation of immune effector process regulation of leukocyte mediated cytotoxicity positive regulation of microglial cell mediated cytotoxicity leukocyte mediated cytotoxicity positive regulation of myeloid leukocyte mediated immunity regulation of cell killing positive regulation of cell killing regulation of microglial cell mediated cytotoxicity cell killing protein localization to chromatin regulation of protein localization negative regulation of protein localization to chromatin protein localization to chromosome macromolecule localization protein localization to organelle intracellular protein localization regulation of protein localization to chromatin negative regulation of protein localization interleukin-6-mediated signaling pathway response to interleukin-6 cellular response to interleukin-6 response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus cellular response to stress cellular senescence oncogene-induced cell senescence germinal center B cell differentiation positive regulation of locomotion regulation of cell motility dendritic cell chemotaxis regulation of myeloid dendritic cell chemotaxis positive regulation of chemotaxis positive regulation of cell migration taxis cell migration regulation of mononuclear cell migration chemotaxis regulation of leukocyte chemotaxis regulation of leukocyte migration positive regulation of leukocyte chemotaxis positive regulation of myeloid dendritic cell chemotaxis leukocyte migration myeloid dendritic cell chemotaxis regulation of locomotion positive regulation of dendritic cell chemotaxis positive regulation of cell motility regulation of cell migration myeloid leukocyte migration positive regulation of mononuclear cell migration cell motility locomotion cell chemotaxis regulation of dendritic cell chemotaxis positive regulation of leukocyte migration regulation of chemotaxis dendritic cell migration mononuclear cell migration leukocyte chemotaxis positive regulation of cell communication positive regulation of signal transduction p38MAPK cascade positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade positive regulation of p38MAPK cascade regulation of p38MAPK cascade MAPK cascade positive regulation of signaling osteoclast differentiation negative regulation of gene expression regulation of non-canonical NF-kappaB signal transduction negative regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction extrinsic apoptotic signaling pathway via death domain receptors cell death extrinsic apoptotic signaling pathway apoptotic signaling pathway TRAIL-activated apoptotic signaling pathway apoptotic process programmed cell death	protein-containing complex transcription regulator complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle protein-containing complex transcription regulator complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A, C, E, G	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	protein binding binding signaling receptor binding transcription regulator activity transcription coregulator activity chromatin binding transcription coactivator activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity ATP-dependent activity molecular adaptor activity	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of chromosome segregation regulation of cell cycle phase transition regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization regulation of mitotic cell cycle cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation cell cycle process regulation of cell cycle process chromosome organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition organelle organization mitotic cell cycle process regulation of sister chromatid segregation nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition developmental process regulation of developmental process cellular developmental process regulation of cell differentiation positive regulation of myoblast differentiation muscle structure development positive regulation of developmental process positive regulation of cell differentiation cell differentiation anatomical structure development regulation of myoblast differentiation myoblast differentiation animal gross anatomical part developmental process RNA metabolic process positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization chromatin remodeling transcription initiation at RNA polymerase II promoter regulation of biosynthetic process epigenetic regulation of gene expression gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process DNA-templated transcription initiation regulation of gene expression biosynthetic process positive regulation of gene expression transcription initiation-coupled chromatin remodeling regulation of macromolecule biosynthetic process multicellular organismal process regulation of stem cell population maintenance stem cell population maintenance positive regulation of stem cell population maintenance positive regulation of multicellular organismal process regulation of multicellular organismal process maintenance of cell number cellular component disassembly protein-containing complex organization protein-DNA complex disassembly protein-containing complex disassembly protein-DNA complex organization nucleosome disassembly nucleosome organization cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation nucleotide-excision repair regulation of nucleotide-excision repair regulation of G0 to G1 transition G0 to G1 transition regulation of RNA metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of DNA-templated transcription response to lipid response to fatty acid response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid negative regulation of developmental process negative regulation of biological process negative regulation of cellular process negative regulation of cell differentiation regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development multicellular organism development positive regulation of cell activation T cell activation positive regulation of leukocyte activation T cell differentiation regulation of immune system process positive regulation of immune system process positive regulation of T cell activation positive regulation of cell development regulation of leukocyte cell-cell adhesion leukocyte differentiation cell development positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of hemopoiesis regulation of cell-cell adhesion regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation immune system process regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix RSC-type complex ATPase complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix RSC-type complex ATPase complex protein-containing complex catalytic complex nuclear protein-containing complex intracellular membraneless organelle chromatin chromosome membraneless organelle SWI/SNF superfamily-type complex brahma complex GBAF complex SWI/SNF complex nucleoplasm nBAF complex chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome npBAF complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B, D, F, H	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B, D, F, H	IPR000418	Ets domain	Domain
B, D, F, H	IPR046328	ETS family	Family
A, C, E, G	IPR003121	SWIB/MDM2 domain	Domain
A, C, E, G	IPR038041	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 1, SWIB domain	Domain
A, C, E, G	IPR036885	SWIB/MDM2 domain superfamily	Homologous Superfamily
A, C, E, G	IPR019835	SWIB domain	Domain
A, C, E, G	IPR063302	SWIFT domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D, F, H	: P17947	acute myeloid leukemia myeloid leukemia cancer chronic monocytic leukemia Precursor T-Cell Lymphoblastic Leukemia-Lymphoma endogenous depression lung carcinoma open-angle glaucoma prostate carcinoma salmonellosis cerebrovascular disorder hematologic disease osteosarcoma psoriasis typhoid fever acute myeloid leukemia myeloid leukemia cancer chronic monocytic leukemia Precursor T-Cell Lymphoblastic Leukemia-Lymphoma endogenous depression lung carcinoma open-angle glaucoma prostate carcinoma salmonellosis cerebrovascular disorder hematologic disease osteosarcoma psoriasis typhoid fever hypertensive disorder non-small cell lung carcinoma rheumatoid arthritis
A, C, E, G	: Q96GM5	atypical teratoid rhabdoid tumor colorectal cancer intellectual disability malignant glioma medulloblastoma primitive neuroectodermal tumor breast adenocarcinoma glioblastoma large cell medulloblastoma malignant mesothelioma Neoplasm of uncertain or unknown behavior of breast psoriasis breast carcinoma hypertensive disorder lung cancer atypical teratoid rhabdoid tumor colorectal cancer intellectual disability malignant glioma medulloblastoma primitive neuroectodermal tumor breast adenocarcinoma glioblastoma large cell medulloblastoma malignant mesothelioma Neoplasm of uncertain or unknown behavior of breast psoriasis breast carcinoma hypertensive disorder lung cancer osteosarcoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9PSL | pdb_00009psl

Co-crystal structure of BAF60A (SMARCD1) in complex with PU.1 peptide

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation