9PI9 | pdb_00009pi9

Sacituzumab Fab bound to Trop2 Dimer


SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B, D
Light ChainIGKV6 Kappatumor-associated calcium signal transducer 2SAbDab (2025-12-12)
A, C
Heavy ChainIGHV7 -tumor-associated calcium signal transducer 2SAbDab (2025-12-12)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E, F
PF21283EPCAM/Trop-2, C-terminal (EPCAM-Trop-2_C)EPCAM/Trop-2, C-terminalEpCAM (epithelial cell adhesion molecule, also known as Trop-1) and Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) are transmembrane glycoproteins that belong to the tumour-associated calcium signal transducer (TACSTD) f ...EpCAM (epithelial cell adhesion molecule, also known as Trop-1) and Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) are transmembrane glycoproteins that belong to the tumour-associated calcium signal transducer (TACSTD) family. They are evolutionarily related and both are implicated in signaling triggered by proteolytic cleavage within the ectodomain [1,3]. They share an overall similar structure but differ in their dimers formation. They consist of an ectodomain with an N-terminal, thyroglobulin type-1 (TY, Pfam:PF00086) and C-terminal domains. This entry represents the C-terminal domain of EpCAM and Trop-2, which has an alpha+beta fold [1-3].
Domain
E, F
PF00086Thyroglobulin type-1 repeat (Thyroglobulin_1)Thyroglobulin type-1 repeatThyroglobulin type 1 repeats are thought to be involved in the control of proteolytic degradation [2]. The domain usually contains six conserved cysteines. These form three disulphide bridges. Cysteines 1 pairs with 2, 3 with 4 and 5 with 6. Domain
E, F
PF18635Epithelial cell adhesion molecule, N-terminal domain (EpCAM_N)Epithelial cell adhesion molecule, N-terminal domainEpCAM (epithelial cell adhesion molecule), a stem and carcinoma cell marker, is a cell surface protein involved in homotypic cell-cell adhesion via intercellular oligomerization and proliferative signalling via proteolytic cleavage. Structure analysi ...EpCAM (epithelial cell adhesion molecule), a stem and carcinoma cell marker, is a cell surface protein involved in homotypic cell-cell adhesion via intercellular oligomerization and proliferative signalling via proteolytic cleavage. Structure analysis indicate that it is composed of three domains: N-domain, Thyroglobulin type-1A (TY) domain and the C-terminal domain. This entry represents the small and compact disulphide-rich N-terminal domain of 39 amino-acid residues [1]. Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) is also included in this entry, as they are evolutionarily related and both are implicated in signaling triggered by proteolytic cleavage within the ectodomain [1-3]. They share an overall similar structure but differ in their dimers formation.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E, F
Tumor-associated calcium signal transducer 2-
B, D
Sacituzumab Light Chain---
A, C
Sacituzumab Heavy Chain---

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E, F
PCA Parent Component: GLN

RESIDAA0031

PSI-MOD :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420