9PGG | pdb_00009pgg

Cryo-EM structure of bacteriophage P22 gp1-gp5-gp4 complex at 2.76 angstrom

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth Az]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Y [auth Ay]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
X [auth Ax]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
W [auth Aw]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
V [auth Av]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
U [auth Au]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
T [auth At]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
S [auth As]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
R [auth Ar]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Q [auth Aq]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
P [auth Ap]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
AA [auth Ba]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
O [auth Ao]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
N [auth An]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
M [auth Am]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
L [auth Al]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
K [auth Ak]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
J [auth Aj]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
I [auth Ai]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
H [auth Ah]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
G [auth Ag]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
F [auth Af]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
E [auth Ae]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
D [auth Ad]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
C [auth Ac]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
B [auth Ab]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
A [auth Aa]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
MA [auth Bx]	V-set	e9pggBx1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
LA [auth Bv]	Cofilin_ADF	e9pggBv1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
KA [auth Bt]	Cofilin_ADF	e9pggBt1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
JA [auth Br]	Cofilin_ADF	e9pggBr1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
IA [auth Bp]	Cofilin_ADF	e9pggBp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
HA [auth Bn]	Cofilin_ADF	e9pggBn1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
GA [auth Bl]	Cofilin_ADF	e9pggBl1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
FA [auth Bj]	Cofilin_ADF	e9pggBj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
EA [auth Bh]	Cofilin_ADF	e9pggBh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
DA [auth Bf]	Cofilin_ADF	e9pggBf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
CA [auth Bd]	Cofilin_ADF	e9pggBd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
BA [auth Bb]	Cofilin_ADF	e9pggBb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
Z [auth Az]	Cofilin_ADF	e9pggAz1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
Y [auth Ay]	Cofilin_ADF	e9pggAy1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
X [auth Ax]	V-set	e9pggAx1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
W [auth Aw]	Cofilin_ADF	e9pggAw1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
V [auth Av]	Cofilin_ADF	e9pggAv1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
U [auth Au]	Cofilin_ADF	e9pggAu1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
T [auth At]	Cofilin_ADF	e9pggAt1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
S [auth As]	Cofilin_ADF	e9pggAs1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
R [auth Ar]	Cofilin_ADF	e9pggAr1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
Q [auth Aq]	Cofilin_ADF	e9pggAq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
P [auth Ap]	Cofilin_ADF	e9pggAp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
AA [auth Ba]	Cofilin_ADF	e9pggBa1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
O [auth Ao]	Cofilin_ADF	e9pggAo1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
N [auth An]	Cofilin_ADF	e9pggAn1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
M [auth Am]	Cofilin_ADF	e9pggAm1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
L [auth Al]	Cofilin_ADF	e9pggAl1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
K [auth Ak]	Cofilin_ADF	e9pggAk1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
J [auth Aj]	Cofilin_ADF	e9pggAj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
I [auth Ai]	Cofilin_ADF	e9pggAi1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
H [auth Ah]	Cofilin_ADF	e9pggAh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
G [auth Ag]	Cofilin_ADF	e9pggAg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
F [auth Af]	Cofilin_ADF	e9pggAf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
E [auth Ae]	Cofilin_ADF	e9pggAe1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
D [auth Ad]	Cofilin_ADF	e9pggAd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
C [auth Ac]	Cofilin_ADF	e9pggAc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
B [auth Ab]	Cofilin_ADF	e9pggAb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
A [auth Aa]	P22_CoatProtein	e9pggAa1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: P22_CoatProtein	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], GA [auth Bl], HA [auth Bn], IA [auth Bp], JA [auth Br], KA [auth Bt], LA [auth Bv], MA [auth Bx]	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction viral DNA genome packaging, headful	protein-containing complex viral capsid virion component viral portal complex
AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	Peptidoglycan hydrolase gp4	hydrolase activity catalytic activity	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, short tail mechanism symbiont entry into host cell via disruption of host cell envelope	virus tail virion component
A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], F [auth Af], G [auth Ag], H [auth Ah], I [auth Ai], J [auth Aj], K [auth Ak], L [auth Al], M [auth Am], N [auth An], O [auth Ao]	Major capsid protein	identical protein binding protein binding binding	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component viral procapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], GA [auth Bl], HA [auth Bn], IA [auth Bp], JA [auth Br], KA [auth Bt], LA [auth Bv], MA [auth Bx]	IPR032427	Phage P22-like portal protein	Family
AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR020362	Tail accessory factor GP4	Family
A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], F [auth Af], G [auth Ag], H [auth Ah], I [auth Ai], J [auth Aj], K [auth Ak], L [auth Al], M [auth Am], N [auth An], O [auth Ao]	IPR024659	Major capsid protein Gp5	Family