9PGG | pdb_00009pgg

Cryo-EM structure of bacteriophage P22 gp1-gp5-gp4 complex at 2.76 angstrom

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AA [auth Ba]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
R [auth Ar]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
S [auth As]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Z [auth Az]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Y [auth Ay]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
X [auth Ax]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
W [auth Aw]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
V [auth Av]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
U [auth Au]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
T [auth At]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Q [auth Aq]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
P [auth Ap]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
G [auth Ag]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
L [auth Al]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
O [auth Ao]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
N [auth An]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
M [auth Am]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
K [auth Ak]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
J [auth Aj]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
I [auth Ai]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
H [auth Ah]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
F [auth Af]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
E [auth Ae]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
D [auth Ad]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
C [auth Ac]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
B [auth Ab]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
A [auth Aa]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], GA [auth Bl], HA [auth Bn], IA [auth Bp], JA [auth Br], KA [auth Bt], LA [auth Bv], MA [auth Bx]	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction viral DNA genome packaging, headful	protein-containing complex viral capsid virion component viral portal complex
AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	Peptidoglycan hydrolase gp4	hydrolase activity catalytic activity lyase activity	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, short tail mechanism symbiont entry into host cell via disruption of host cell envelope	virus tail virion component
A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], F [auth Af], G [auth Ag], H [auth Ah], I [auth Ai], J [auth Aj], K [auth Ak], L [auth Al], M [auth Am], N [auth An], O [auth Ao]	Major capsid protein	identical protein binding protein binding binding	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component viral procapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], BA [auth Bb], CA [auth Bd], DA [auth Bf], EA [auth Bh], FA [auth Bj], GA [auth Bl], HA [auth Bn], IA [auth Bp], JA [auth Br], KA [auth Bt], LA [auth Bv], MA [auth Bx]	IPR032427	Phage P22-like portal protein	Family
AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], AA [auth Ba], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR020362	Tail accessory factor GP4	Family
A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], A [auth Aa], B [auth Ab], C [auth Ac], D [auth Ad], E [auth Ae], F [auth Af], G [auth Ag], H [auth Ah], I [auth Ai], J [auth Aj], K [auth Ak], L [auth Al], M [auth Am], N [auth An], O [auth Ao]	IPR024659	Major capsid protein Gp5	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.