9PFG | pdb_00009pfg

Min22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a H3:SNAP-25 SN1), 4:2:2 alphaSNAP-syntaxin-1a H3-SNAP-25 SN1 subcomplex local refinement, non-hydrolyzing, class 28

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth K]SCOP2B SuperfamilyADC-like 8042527 3001132 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyCdc48 domain 2-like 8034899 3000725 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyCdc48 domain 2-like 8034899 3000725 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyADC-like 8042527 3001132 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyTPR-like 8080089 3001345 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyTPR-like 8080089 3001345 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyTPR-like 8080089 3001345 SCOP2B (2022-06-29)
E [auth H]SCOP2B SuperfamilyTPR-like 8080089 3001345 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySNARE fusion complex 8043667 3001549 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySNARE fusion complex 8043667 3001549 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J],
J [auth K]		PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
I [auth J],
J [auth K]		PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
B, D
PF05739SNARE domain (SNARE)SNARE domainMost if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J],
J [auth K]		Vesicle-fusing ATPase
E [auth H],
F [auth E],
G [auth F],
H [auth G]		Alpha-soluble NSF attachment protein
B, D
Syntaxin-1A
A, C
Synaptosomal-associated protein 25

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J],
J [auth K]		IPR004201CDC48, domain 2Domain
I [auth J],
J [auth K]		IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
I [auth J],
J [auth K]		IPR003593AAA+ ATPase domainDomain
I [auth J],
J [auth K]		IPR003959ATPase, AAA-type, coreDomain
I [auth J],
J [auth K]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth J],
J [auth K]		IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
I [auth J],
J [auth K]		IPR041569AAA ATPase, AAA+ lid domainDomain
I [auth J],
J [auth K]		IPR039812Vesicle-fusing ATPaseFamily
I [auth J],
J [auth K]		IPR054419NSF, AAA+ ATPase lid domainDomain
I [auth J],
J [auth K]		IPR003960ATPase, AAA-type, conserved siteConserved Site
I [auth J],
J [auth K]		IPR003338CDC48, N-terminal subdomainDomain
E [auth H],
F [auth E],
G [auth F],
H [auth G]		IPR000744NSF attachment proteinFamily
E [auth H],
F [auth E],
G [auth F],
H [auth G]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
B, D
IPR000727Target SNARE coiled-coil homology domainDomain
B, D
IPR006012Syntaxin/epimorphin, conserved siteConserved Site
B, D
IPR010989SNAREHomologous Superfamily
B, D
IPR006011Syntaxin, N-terminal domainDomain
B, D
IPR045242SyntaxinFamily
A, C
IPR000727Target SNARE coiled-coil homology domainDomain
A, C
IPR039077SNAP25, N-terminal SNARE motif, chordatesDomain
A, C
IPR000928SNAP-25 domainDomain