Annotations: 9PCS

Crystal structure of Dihydrodipicolinate Synthase from Mycobacterium tuberculosis in complex with pyruvate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8033948	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cofilin_ADF	e9pcsA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
C	Cofilin_ADF	e9pcsC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
D	Cofilin_ADF	e9pcsD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
F	Cofilin_ADF	e9pcsF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
G	Cofilin_ADF	e9pcsG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
H	Cofilin_ADF	e9pcsH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
E	Cofilin_ADF	e9pcsE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
B	Cofilin_ADF	e9pcsB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00701	Dihydrodipicolinate synthetase family (DHDPS)	Dihydrodipicolinate synthetase family	This family has a TIM barrel structure.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	4-hydroxy-tetrahydrodipicolinate synthase	4-hydroxy-tetrahydrodipicolinate synthase activity amine-lyase activity lyase activity catalytic activity carbon-nitrogen lyase activity	small molecule biosynthetic process oxoacid metabolic process L-lysine biosynthetic process aspartate family amino acid biosynthetic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process carboxylic acid biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process small molecule biosynthetic process oxoacid metabolic process L-lysine biosynthetic process aspartate family amino acid biosynthetic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process carboxylic acid biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process small molecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020624	Schiff base-forming aldolase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005263	4-hydroxy-tetrahydrodipicolinate synthase, DapA	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020625	Schiff base-forming aldolase, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002220	DapA-like	Family