9PCP | pdb_00009pcp

NER dual incision complex - NoG


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8054245 3002019 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCysteine-rich domain 8033482 3001452 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyvWA-like 8057086 3000832 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyvWA-like 8054198 3000832 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTFB5-like 8034306 3000733 SCOP2B (2022-06-29)
KSCOP2B Superfamilybeta-hairpin DNA-binding domain-like 8036686 3002139 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8039080 3000068 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyHelix-hairpin-helix tandem 8036445 3000163 SCOP2B (2022-06-29)
O [auth R]SCOP2B SuperfamilyHelix-hairpin-helix tandem 8036446 3000163 SCOP2B (2022-06-29)
O [auth R]SCOP2B SuperfamilyRestriction endonuclease-like 8036551 3000104 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13625Helicase conserved C-terminal domain (Helicase_C_3)Helicase conserved C-terminal domainThis domain family is found in a wide variety of helicases and helicase-related proteins. Domain
PF04851Type III restriction enzyme, res subunit (ResIII)Type III restriction enzyme, res subunit- Family
PF16203ERCC3/RAD25/XPB C-terminal helicase (ERCC3_RAD25_C)ERCC3/RAD25/XPB C-terminal helicaseThis is the C-terminal helicase domain of ERCC3, RAD25 and XPB helicases [1]. Domain
PF13307Helicase C-terminal domain (Helicase_C_2)Helicase C-terminal domainThis domain is found at the C-terminus of DEAD-box helicases. Domain
PF06733DEAD_2 (DEAD_2)DEAD_2- Family
PF06777Helical and beta-bridge domain (HBB)Helical and beta-bridge domainHBB is the domain on DEAD-box eukaryotic DNA repair helicases (EC:3.6.1.-) that appears to be a unique fold. It's conformation is of alpha-helices 12-16 plus a short beta-bridge to the FeS-cluster domain at the N-terminal. The full-length XPD protein ...HBB is the domain on DEAD-box eukaryotic DNA repair helicases (EC:3.6.1.-) that appears to be a unique fold. It's conformation is of alpha-helices 12-16 plus a short beta-bridge to the FeS-cluster domain at the N-terminal. The full-length XPD protein verifies the presence of damage to DNA and allows DNA repair to proceed. XPD is an assembly of several domains to form a doughnut-shaped molecule that is able to separate two DNA strands and scan the DNA for damage. HBB helps to form the overall DNA-clamping architecture [1]. This family represents a conserved region within a number of eukaryotic DNA repair helicases (EC:3.6.1.-).
Domain
PF03849Transcription factor Tfb2 (Tfb2)Transcription factor Tfb2- Family
PF18307Transcription factor Tfb2 (p52) C-terminal domain (Tfb2_C)Transcription factor Tfb2 (p52) C-terminal domainThis is the C-terminal domain of Transcription factor Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred to as p52 in humans. The interaction between p8-Tfb5 and p52-Tfb2 has a key role in the maintenance of the transcription factor TFIIH arc ...This is the C-terminal domain of Transcription factor Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred to as p52 in humans. The interaction between p8-Tfb5 and p52-Tfb2 has a key role in the maintenance of the transcription factor TFIIH architecture and TFIIHs function in nucleotide-excision repair (NER) pathway. The C-terminal domain of Tfb2 is thought to have a crucial role in DNA repair [1].
Domain
PF04056Ssl1-like (Ssl1)Ssl1-like- Family
PF07975TFIIH C1-like domain (C1_4)TFIIH C1-like domainThe carboxyl-terminal region of TFIIH is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD ...The carboxyl-terminal region of TFIIH is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C (Pfam:PF00130) [1].
Domain
PF03850Transcription factor Tfb4 (Tfb4)Transcription factor Tfb4This family appears to be distantly related to the VWA domain. Domain
PF10405Rad4 beta-hairpin domain 3 (BHD_3)Rad4 beta-hairpin domain 3This short domain is found in the Rad4 protein. This domain binds to DNA [1]. Domain
PF10403Rad4 beta-hairpin domain 1 (BHD_1)Rad4 beta-hairpin domain 1This short domain is found in the Rad4 protein. This domain binds to DNA [1]. Domain
PF10404Rad4 beta-hairpin domain 2 (BHD_2)Rad4 beta-hairpin domain 2This short domain is found in the Rad4 protein. This domain binds to DNA [1]. Domain
PF09280XPC-binding domain (XPC-binding)XPC-binding domainMembers of this family adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair [1]. Domain
PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
PF01286XPA protein N-terminal (XPA_N)XPA protein N-terminalDomain
PF05181XPA protein C-terminus (XPA_C)XPA protein C-terminusDomain
N [auth Q]PF02732ERCC4 domain (ERCC4)ERCC4 domainThis domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase [2-3]. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease. Domain
O [auth R]PF00633Helix-hairpin-helix motif (HHH)Helix-hairpin-helix motif- Motif
O [auth R]PF03834Binding domain of DNA repair protein Ercc1 (rad10/Swi10) (Rad10)Binding domain of DNA repair protein Ercc1 (rad10/Swi10)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
TFIIH basal transcription factor complex helicase XPB subunit
General transcription and DNA repair factor IIH helicase subunit XPD
General transcription factor IIH subunit 1
General transcription factor IIH subunit 4, p52
General transcription factor IIH subunit 2
General transcription factor IIH subunit 3
General transcription factor IIH subunit 5-
DNA repair protein complementing XP-C cells
UV excision repair protein RAD23 homolog B
Centrin-2
DNA repair protein complementing XP-A cells
DNA (Cy5)---
DNA---
N [auth Q]DNA repair endonuclease XPF
O [auth R]DNA excision repair protein ERCC-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR032830Helicase XPB/Ssl2, N-terminal domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR006935Helicase/UvrB, N-terminalDomain
IPR001650Helicase, C-terminal domain-likeDomain
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR032438ERCC3/RAD25/XPB helicase, C-terminal domainDomain
IPR001161Helicase XPB/Ssl2Family
IPR050615ATP-dependent DNA HelicaseFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR006554Helicase-like, DEXD box c2 typeDomain
IPR010614RAD3-like helicase, DEADDomain
IPR001945RAD3/XPDFamily
IPR013020ATP-dependent helicase Rad3/Chl1-likeFamily
IPR010643Helical and beta-bridge domainDomain
IPR045028Helicase superfamily 1/2, DinG/Rad3-likeFamily
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
IPR006555ATP-dependent helicase, C-terminalDomain
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typeDomain
IPR013876TFIIH p62 subunit, N-terminalDomain
IPR035925BSD domain superfamilyHomologous Superfamily
IPR027079TFIIH subunit Tfb1/GTF2H1Family
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR005607BSD domainDomain
IPR040662Transcription factor Tfb2, C-terminal domainDomain
IPR004598Transcription factor TFIIH subunit p52/Tfb2Family
IPR007198Ssl1-likeDomain
IPR012170TFIIH subunit Ssl1/p44Family
IPR004595TFIIH C1-like domainDomain
IPR013087Zinc finger C2H2-typeDomain
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR002035von Willebrand factor, type ADomain
IPR046349C1-like domain superfamilyHomologous Superfamily
IPR004600TFIIH subunit Tfb4/GTF2H3Family
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR009400TFIIH subunit TTDA/Tfb5Family
IPR035935TFB5-like superfamilyHomologous Superfamily
IPR036985Transglutaminase-like superfamilyHomologous Superfamily
IPR018325Rad4/PNGase transglutaminase-like foldDomain
IPR004583DNA repair protein Rad4Family
IPR018328Rad4 beta-hairpin domain 3Domain
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
IPR018327Rad4 beta-hairpin domain 2Domain
IPR018326Rad4 beta-hairpin domain 1Domain
IPR042488Rad4, beta-hairpin domain 3 superfamilyHomologous Superfamily
IPR018026DNA repair protein Rad4-likeFamily
IPR004806UV excision repair protein Rad23Family
IPR036353XPC-binding domain superfamilyHomologous Superfamily
IPR015360XPC-binding domainDomain
IPR015940Ubiquitin-associated domainDomain
IPR041811RAD23A/RAD23B, UBA1 domainDomain
IPR000626Ubiquitin-like domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR009060UBA-like superfamilyHomologous Superfamily
IPR006636Heat shock chaperonin-bindingDomain
IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
IPR050145Centrin/CML-likeFamily
IPR002048EF-hand domainDomain
IPR011992EF-hand domain pairHomologous Superfamily
IPR018247EF-Hand 1, calcium-binding siteBinding Site
IPR009061Putative DNA-binding domain superfamilyHomologous Superfamily
IPR022656XPA, C-terminalDomain
IPR022652Zinc finger, XPA-type, conserved siteConserved Site
IPR000465XPA/RAD14Family
IPR037129XPA domain superfamilyHomologous Superfamily
IPR022658XPA, conserved siteConserved Site
N [auth Q]IPR011335Restriction endonuclease type II-likeHomologous Superfamily
N [auth Q]IPR006167DNA repair protein XPFFamily
N [auth Q]IPR010994RuvA domain 2-likeHomologous Superfamily
N [auth Q]IPR006166ERCC4 domainDomain
N [auth Q]IPR047520DNA repair endonuclease XPF, nuclease domainDomain
O [auth R]IPR011335Restriction endonuclease type II-likeHomologous Superfamily
O [auth R]IPR010994RuvA domain 2-likeHomologous Superfamily
O [auth R]IPR004579ERCC1/RAD10/SWI10 familyFamily
O [auth R]IPR047260ERCC1-like, central domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
P19447
P18074
P32780
Q92759
Q13889
Q6ZYL4
Q01831
P54727
P41208
P23025
N [auth Q]Q92889
O [auth R]P07992